CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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LOC_Os04g01439
(
Oryza sativa
)
CCHC ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
IPR001878
LOC_Os04g01439
T11110_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
LOC_Os04g01439.1
CCHC ZF
326
343
RRCFECGEKGHFASKCPS
Links
Other
CCHC ZF
family RBPs
Other
Oryza sativa
RBPs
36 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
ARB_03747
Arthroderma benhamiae
ARB_03747
N
0.000
An02g12270
Aspergillus niger
CADANGAG00002750
N
0.000
ANIA_02989
Aspergillus nidulans
CADANIAG00010091
N
0.000
AO090005001419
Aspergillus oryzae
CADAORAG00003299
N
0.000
ATEG_01614
Aspergillus terreus
CADATEAG00002872
N
0.000
NFIA_068550
Neosartorya fischeri
CADNFIAG00006348
N
0.000
estExt_fgenesh1_kg.C_chr_50164
Mycosphaerella graminicola
estExt_fgenesh1_kg.C_chr_50164
N
0.000
estExt_fgenesh5_pg.C_40456
Trichoderma reesei
estExt_fgenesh5_pg.C_40456
N
0.000
estExt_Genewise1Plus.C_12858
Trichoderma atroviride
estExt_Genewise1Plus.C_12858
N
0.000
estExt_Genewise1Plus.C_31070
Cochliobolus heterostrophus C5
estExt_Genewise1Plus.C_31070
N
0.000
estExt_Genewise1Plus.C_70764
Mycosphaerella fijiensis
estExt_Genewise1Plus.C_70764
N
0.000
genemark.1698_g
Thielavia terrestris
genemark.1698_g
N
0.000
AB02963.1
Alternaria brassicicola
AB02963.1
N
0.000
e_gw1.00866.790.1
Aspergillus carbonarius
e_gw1.00866.790.1
N
0.000
GSTUMT00008723001
Tuber melanosporum
GSTUMT00008723001
N
0.000
Pc06g01290
Penicillium chrysogenum
Pc06g01290
N
0.000
AFUA_3G08580
Aspergillus fumigatus
CADAFUAG00005852
N
0.000
AFLA_086540
Aspergillus flavus
CADAFLAG00001433
N
0.000
BDBG_01954
Blastomyces dermatitidis
BDBG_01954
N
0.000
CIMG_07653
Coccidioides immitis
CIMG_07653
N
0.000
FGSG_00442
Fusarium graminearum
FGSG_00442
N
0.000
FOXG_00610
Fusarium oxysporum
FOXG_00610
N
0.000
FVEG_00902
Fusarium verticillioides
FVEG_00902
N
0.000
GLRG_03991
Colletotrichum graminicola
GLRG_03991
N
0.000
MCYG_06115
Microsporum canis
MCYG_06115
N
0.000
MGYG_01973
Microsporum gypseum
MGYG_01973
N
0.000
PABG_01590
Paracoccidioides brasiliensis
PABG_01590
N
0.000
PTRG_07976
Pyrenophora tritici repentis
PTRG_07976
N
0.000
SNOG_04431
Stagonospora nodorum
SNOG_04431
N
0.000
TERG_04706
Trichophyton rubrum
TERG_04706
N
0.000
TESG_06069
Trichophyton tonsurans
TESG_06069
N
0.000
UREG_07630
Uncinocarpus reesii
UREG_07630
N
0.000
ACLA_036560
Aspergillus clavatus
CADACLAG00003885
N
0.000
PMAA_013050
Penicillium marneffei
PMAA_013050
N
0.000