LOC_Os05g17540 (Oryza sativa)
CCHC ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00098 (zf-CCHC) IPR001878 LOC_Os05g17540 T11421_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
LOC_Os05g17540.1 CCHC ZF 220 237

Links

Other CCHC ZF family RBPs
Other Oryza sativa RBPs

34 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
SAMD4A Homo sapiens ENSG00000020577 D 0.000
SAMD4A Sorex araneus ENSSARG00000014067 I 0.000
SMAG1_RAT Rattus norvegicus ENSRNOG00000010489 I 0.000
SAMD4A Pteropus vampyrus ENSPVAG00000016060 I 0.000
SAMD4A Pan troglodytes ENSPTRG00000006364 I 0.000
ENSPPYG00000005832 Pongo pygmaeus ENSPPYG00000005832 I 0.000
SAMD4A Procavia capensis ENSPCAG00000010880 I 0.000
ENSOPRG00000011493 Ochotona princeps ENSOPRG00000011493 I 0.000
SAMD4A Oryctolagus cuniculus ENSOCUG00000003420 I 0.000
SAMD4A Anolis carolinensis ENSACAG00000016355 I 0.000
SAMD4A Sus scrofa ENSSSCG00000005050 I 0.000
samd4a Xenopus tropicalis ENSXETG00000012217 I 0.000
SAMD4A Tursiops truncatus ENSTTRG00000008280 I 0.000
SAMD4A Tarsius syrichta ENSTSYG00000010165 I 0.000
SAMD4B Tarsius syrichta ENSTSYG00000003909 I 0.000
ENSTGUG00000014163 Taeniopygia guttata ENSTGUG00000014163 I 0.000
SAMD4A Taeniopygia guttata ENSTGUG00000013086 I 0.000
SAMD4A Tupaia belangeri ENSTBEG00000010696 I 0.000
SAMD4A Spermophilus tridecemlineatus ENSSTOG00000015276 I 0.000
Samd4 Mus musculus ENSMUSG00000021838 I 0.000
SAMD4A Monodelphis domestica ENSMODG00000011669 I 0.000
A6QPG4_BOVIN Bos taurus ENSBTAG00000001468 I 0.000
SAMD4A Canis familiaris ENSCAFG00000014940 I 0.000
SAMD4A Callithrix jacchus ENSCJAG00000018182 I 0.000
SAMD4A Cavia porcellus ENSCPOG00000014637 I 0.000
SAMD4A Dasypus novemcinctus ENSDNOG00000015876 I 0.000
SAMD4A Equus caballus ENSECAG00000010681 I 0.000
SAMD4A Erinaceus europaeus ENSEEUG00000005738 I 0.000
SAMD4A Echinops telfairi ENSETEG00000018627 I 0.000
SAMD4A Felis catus ENSFCAG00000000005 I 0.000
SAMD4A Gallus gallus ENSGALG00000012203 I 0.000
SAMD4A Gorilla gorilla ENSGGOG00000000673 I 0.000
SAMD4A Loxodonta africana ENSLAFG00000013245 I 0.000
SAMD4A Macropus eugenii ENSMEUG00000013419 I 0.000
SAMD4A Meleagris gallopavo ENSMGAG00000013686 I 0.000
SAMD4A Microcebus murinus ENSMICG00000016212 I 0.000
SAMD4A Myotis lucifugus ENSMLUG00000004192 I 0.000
SAMD4A Macaca mulatta ENSMMUG00000010315 I 0.000
Ame_R007760 Ailuropoda melanoleuca Ame_R007760 I 0.000