CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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LOC_Os07g05430
(
Oryza sativa
)
CCHC ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
IPR001878
LOC_Os07g05430
T11732_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
LOC_Os07g05430.1
CCHC ZF
286
303
IKCFNCEEYGHYSNQCPH
Links
Other
CCHC ZF
family RBPs
Other
Oryza sativa
RBPs
27 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
LOC_Os01g03230
Oryza sativa
LOC_Os01g03230
N
0.000
LOC_Os01g22100
Oryza sativa
LOC_Os01g22100
N
0.000
LOC_Os03g36620
Oryza sativa
LOC_Os03g36620
N
0.000
LOC_Os05g13510
Oryza sativa
LOC_Os05g13510
N
0.000
LOC_Os06g17100
Oryza sativa
LOC_Os06g17100
N
0.000
LOC_Os07g16990
Oryza sativa
LOC_Os07g16990
N
0.000
LOC_Os07g39230
Oryza sativa
LOC_Os07g39230
N
0.000
LOC_Os10g40800
Oryza sativa
LOC_Os10g40800
N
0.000
LOC_Os12g16430
Oryza sativa
LOC_Os12g16430
N
0.000