LOC_Os10g03070 (Oryza sativa)
CCHC ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00098 (zf-CCHC) IPR001878 LOC_Os10g03070 T12173_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
LOC_Os10g03070.1 CCHC ZF 276 293

Links

Other CCHC ZF family RBPs
Other Oryza sativa RBPs

34 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
PABPC3 Homo sapiens ENSG00000151846 D 0.000
PABPC1 Homo sapiens ENSG00000070756 D 0.000
Q6IP09 Xenopus laevis Q6IP09 I 0.000
ENSTNIG00000009153 Tetraodon nigroviridis ENSTNIG00000009153 I 0.000
PABPC1 Taeniopygia guttata ENSTGUG00000012067 I 0.000
ENSSSCG00000006063 Sus scrofa ENSSSCG00000006063 I 0.000
Pabpc3 Rattus norvegicus ENSRNOG00000017367 I 0.000
Pabpc2 Rattus norvegicus ENSRNOG00000014527 I 0.000
Pabpc1 Rattus norvegicus ENSRNOG00000008639 I 0.000
ENSPVAG00000016640 Pteropus vampyrus ENSPVAG00000016640 I 0.000
Q2VIP2_PANTR Pan troglodytes ENSPTRG00000022593 I 0.000
XR_023909.1 Pan troglodytes ENSPTRG00000020475 I 0.000
ENSPPYG00000018790 Pongo pygmaeus ENSPPYG00000018790 I 0.000
ENSPPYG00000005219 Pongo pygmaeus ENSPPYG00000005219 I 0.000
PABPC3 Tetraodon nigroviridis ENSTNIG00000013307 I 0.000
ENSTRUG00000003767 Takifugu rubripes ENSTRUG00000003767 I 0.000
P20965 Xenopus laevis P20965 I 0.000
CAA40721 Xenopus laevis CAA40721 I 0.000
AAI08463 Xenopus laevis AAI08463 I 0.000
AAH72110 Xenopus laevis AAH72110 I 0.000
AAH52100 Xenopus laevis AAH52100 I 0.000
AAA60936 Xenopus laevis AAA60936 I 0.000
Ame_R001741 Ailuropoda melanoleuca Ame_R001741 I 0.000
pabpc1 Xenopus tropicalis ENSXETG00000006635 I 0.000
ENSTTRG00000004689 Tursiops truncatus ENSTTRG00000004689 I 0.000
ENSTSYG00000004229 Tarsius syrichta ENSTSYG00000004229 I 0.000
PABPC3 Takifugu rubripes ENSTRUG00000011577 I 0.000
ENSORLG00000003008 Oryzias latipes ENSORLG00000003008 I 0.000
PABPC3 Oryzias latipes ENSORLG00000002691 I 0.000
ENSLAFG00000013994 Loxodonta africana ENSLAFG00000013994 I 0.000
Q2VIP1_9PRIM Gorilla gorilla ENSGGOG00000006785 I 0.000
ENSGACG00000003771 Gasterosteus aculeatus ENSGACG00000003771 I 0.000
PABPC3 Gasterosteus aculeatus ENSGACG00000003572 I 0.000
LOC100056021 Equus caballus ENSECAG00000020699 I 0.000
pabpc1b Danio rerio ENSDARG00000021140 I 0.000
pabpc1a Danio rerio ENSDARG00000017219 I 0.000
LOC100411130 Callithrix jacchus ENSCJAG00000018953 I 0.000
LOC100413032 Callithrix jacchus ENSCJAG00000015833 I 0.000
ENSCAFG00000000567 Canis familiaris ENSCAFG00000000567 I 0.000
ENSACAG00000016470 Anolis carolinensis ENSACAG00000016470 I 0.000
ENSMICG00000009121 Microcebus murinus ENSMICG00000009121 I 0.000
PABPC1 Macaca mulatta ENSMMUG00000017786 I 0.000
ENSOPRG00000009667 Ochotona princeps ENSOPRG00000009667 I 0.000
ENSOCUG00000023935 Oryctolagus cuniculus ENSOCUG00000023935 I 0.000
ENSOCUG00000004354 Oryctolagus cuniculus ENSOCUG00000004354 I 0.000
ENSOANG00000007307 Ornithorhynchus anatinus ENSOANG00000007307 I 0.000
Pabpc2 Mus musculus ENSMUSG00000051732 I 0.000
Pabpc6 Mus musculus ENSMUSG00000046173 I 0.000
Pabpc1 Mus musculus ENSMUSG00000022283 I 0.000
XM_001367383.1 Monodelphis domestica ENSMODG00000017105 I 0.000
ENSMODG00000012040 Monodelphis domestica ENSMODG00000012040 I 0.000
XR_030308.1 Monodelphis domestica ENSMODG00000006222 I 0.000
PABPC3 Macaca mulatta ENSMMUG00000020835 I 0.000
ENSACAG00000002544 Anolis carolinensis ENSACAG00000002544 I 0.000