CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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LOC_Os10g03070
(
Oryza sativa
)
CCHC ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
IPR001878
LOC_Os10g03070
T12173_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
LOC_Os10g03070.1
CCHC ZF
276
293
LRCFECGEKGHFASKCPS
Links
Other
CCHC ZF
family RBPs
Other
Oryza sativa
RBPs
34 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
PABPC3
Homo sapiens
ENSG00000151846
D
0.000
PABPC1
Homo sapiens
ENSG00000070756
D
0.000
Q6IP09
Xenopus laevis
Q6IP09
I
0.000
ENSTNIG00000009153
Tetraodon nigroviridis
ENSTNIG00000009153
I
0.000
PABPC1
Taeniopygia guttata
ENSTGUG00000012067
I
0.000
ENSSSCG00000006063
Sus scrofa
ENSSSCG00000006063
I
0.000
Pabpc3
Rattus norvegicus
ENSRNOG00000017367
I
0.000
Pabpc2
Rattus norvegicus
ENSRNOG00000014527
I
0.000
Pabpc1
Rattus norvegicus
ENSRNOG00000008639
I
0.000
ENSPVAG00000016640
Pteropus vampyrus
ENSPVAG00000016640
I
0.000
Q2VIP2_PANTR
Pan troglodytes
ENSPTRG00000022593
I
0.000
XR_023909.1
Pan troglodytes
ENSPTRG00000020475
I
0.000
ENSPPYG00000018790
Pongo pygmaeus
ENSPPYG00000018790
I
0.000
ENSPPYG00000005219
Pongo pygmaeus
ENSPPYG00000005219
I
0.000
PABPC3
Tetraodon nigroviridis
ENSTNIG00000013307
I
0.000
ENSTRUG00000003767
Takifugu rubripes
ENSTRUG00000003767
I
0.000
P20965
Xenopus laevis
P20965
I
0.000
CAA40721
Xenopus laevis
CAA40721
I
0.000
AAI08463
Xenopus laevis
AAI08463
I
0.000
AAH72110
Xenopus laevis
AAH72110
I
0.000
AAH52100
Xenopus laevis
AAH52100
I
0.000
AAA60936
Xenopus laevis
AAA60936
I
0.000
Ame_R001741
Ailuropoda melanoleuca
Ame_R001741
I
0.000
pabpc1
Xenopus tropicalis
ENSXETG00000006635
I
0.000
ENSTTRG00000004689
Tursiops truncatus
ENSTTRG00000004689
I
0.000
ENSTSYG00000004229
Tarsius syrichta
ENSTSYG00000004229
I
0.000
PABPC3
Takifugu rubripes
ENSTRUG00000011577
I
0.000
ENSORLG00000003008
Oryzias latipes
ENSORLG00000003008
I
0.000
PABPC3
Oryzias latipes
ENSORLG00000002691
I
0.000
ENSLAFG00000013994
Loxodonta africana
ENSLAFG00000013994
I
0.000
Q2VIP1_9PRIM
Gorilla gorilla
ENSGGOG00000006785
I
0.000
ENSGACG00000003771
Gasterosteus aculeatus
ENSGACG00000003771
I
0.000
PABPC3
Gasterosteus aculeatus
ENSGACG00000003572
I
0.000
LOC100056021
Equus caballus
ENSECAG00000020699
I
0.000
pabpc1b
Danio rerio
ENSDARG00000021140
I
0.000
pabpc1a
Danio rerio
ENSDARG00000017219
I
0.000
LOC100411130
Callithrix jacchus
ENSCJAG00000018953
I
0.000
LOC100413032
Callithrix jacchus
ENSCJAG00000015833
I
0.000
ENSCAFG00000000567
Canis familiaris
ENSCAFG00000000567
I
0.000
ENSACAG00000016470
Anolis carolinensis
ENSACAG00000016470
I
0.000
ENSMICG00000009121
Microcebus murinus
ENSMICG00000009121
I
0.000
PABPC1
Macaca mulatta
ENSMMUG00000017786
I
0.000
ENSOPRG00000009667
Ochotona princeps
ENSOPRG00000009667
I
0.000
ENSOCUG00000023935
Oryctolagus cuniculus
ENSOCUG00000023935
I
0.000
ENSOCUG00000004354
Oryctolagus cuniculus
ENSOCUG00000004354
I
0.000
ENSOANG00000007307
Ornithorhynchus anatinus
ENSOANG00000007307
I
0.000
Pabpc2
Mus musculus
ENSMUSG00000051732
I
0.000
Pabpc6
Mus musculus
ENSMUSG00000046173
I
0.000
Pabpc1
Mus musculus
ENSMUSG00000022283
I
0.000
XM_001367383.1
Monodelphis domestica
ENSMODG00000017105
I
0.000
ENSMODG00000012040
Monodelphis domestica
ENSMODG00000012040
I
0.000
XR_030308.1
Monodelphis domestica
ENSMODG00000006222
I
0.000
PABPC3
Macaca mulatta
ENSMMUG00000020835
I
0.000
ENSACAG00000002544
Anolis carolinensis
ENSACAG00000002544
I
0.000