CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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172725
(
Helobdella robusta
)
CCHC ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
IPR001878
172725
T13154_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
172725
CCHC ZF
274
291
VGCYKCGNVGHLAKFCTR
Links
Other
CCHC ZF
family RBPs
Other
Helobdella robusta
RBPs
7 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
158526
Helobdella robusta
158526
N
0.722
164021
Helobdella robusta
164021
N
0.778
165437
Helobdella robusta
165437
N
0.778
169371
Helobdella robusta
169371
N
0.889
173159
Helobdella robusta
173159
N
0.778
175906
Helobdella robusta
175906
N
0.778
182628
Helobdella robusta
182628
N
0.778