CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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175906
(
Helobdella robusta
)
CCHC ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
IPR001878
175906
T13163_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
175906
CCHC ZF
128
145
VGCYHCGSRGHLAKFCTQ
Links
Other
CCHC ZF
family RBPs
Other
Helobdella robusta
RBPs
6 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
173159
Helobdella robusta
173159
N
1.000
165437
Helobdella robusta
165437
N
1.000
164021
Helobdella robusta
164021
N
1.000
182628
Helobdella robusta
182628
N
0.944
169371
Helobdella robusta
169371
N
0.778
172725
Helobdella robusta
172725
N
0.778