CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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XP_001202160.1
(
Strongylocentrotus purpuratus
)
KH
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00013 (KH_1)
IPR018111
XP_001202160.1
T22052_0.6
Superfamily (2011-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
XP_001202160.1
KH
176
225
LSRAIGRIAGKGGKTKFTIENVTKTRIVLADTKIHILGSFQNIKIARTAI
Links
Other
KH
family RBPs
Other
Strongylocentrotus purpuratus
RBPs
251 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
SRSF2
Homo sapiens
ENSG00000161547
D
0.000
GA18884-RA
Drosophila pseudoobscura
FBgn0078884
I
0.000
GF15672
Drosophila ananassae
FBgn0092696
I
0.000
GG10262
Drosophila erecta
FBgn0102571
I
0.000
GH11678
Drosophila grimshawi
FBgn0119158
I
0.000
GI17122
Drosophila mojavensis
FBgn0139866
I
0.000
GM26218
Drosophila sechellia
FBgn0181073
I
0.000
GD22120
Drosophila simulans
FBgn0193531
I
0.000
GJ16161
Drosophila virilis
FBgn0203346
I
0.000
SC35
Drosophila melanogaster
FBgn0040286
I
0.000
srsf2
Xenopus tropicalis
ENSXETG00000025271
I
0.000
SRSF2
Pteropus vampyrus
ENSPVAG00000014264
I
0.000
Sfrs2
Rattus norvegicus
ENSRNOG00000000248
I
0.000
SRSF2
Sus scrofa
ENSSSCG00000012212
I
0.000
SRSF2
Tupaia belangeri
ENSTBEG00000014339
I
0.000
SRSF2
Taeniopygia guttata
ENSTGUG00000007799
I
0.000
SRSF2
Tetraodon nigroviridis
ENSTNIG00000001280
I
0.000
SRSF2
Takifugu rubripes
ENSTRUG00000002362
I
0.000
SRSF2
Takifugu rubripes
ENSTRUG00000018104
I
0.000
AAH45229
Xenopus laevis
AAH45229
I
0.000
GK14626
Drosophila willistoni
FBgn0216632
I
0.000
Ame_R006395
Ailuropoda melanoleuca
Ame_R006395
I
0.000
XP_001180144.1
Strongylocentrotus purpuratus
XP_001180144.1
I
0.000
XP_001180179.1
Strongylocentrotus purpuratus
XP_001180179.1
I
0.000
XP_001180605.1
Strongylocentrotus purpuratus
XP_001180605.1
I
0.000
XP_001198082.1
Strongylocentrotus purpuratus
XP_001198082.1
I
0.000
XP_001198099.1
Strongylocentrotus purpuratus
XP_001198099.1
I
0.000
XP_002161458.1
Hydra magnipapillata
XP_002161458.1
I
0.000
XP_785989.2
Strongylocentrotus purpuratus
XP_785989.2
I
0.000
gw1.5.1039.1
Lottia gigantea
gw1.5.1039.1
I
0.000
estExt_Genewise1Plus.C_1270032
Capitella teleta
estExt_Genewise1Plus.C_1270032
I
0.000
GE12283
Drosophila yakuba
FBgn0230039
I
0.000
ISCW001255
Ixodes scapularis
ISCW001255
I
0.000
97732
Helobdella robusta
97732
I
0.000
e_gw1.120.82.1
Daphnia pulex
e_gw1.120.82.1
I
0.000
e_gw.736.13.1
Nematostella vectensis
e_gw.736.13.1
I
0.000
e_gw.91.104.1
Nematostella vectensis
e_gw.91.104.1
I
0.000
estExt_fgenesh1_pm.C_490002
Capitella teleta
estExt_fgenesh1_pm.C_490002
I
0.000
estExt_Genewise1.C_sca_50520
Lottia gigantea
estExt_Genewise1.C_sca_50520
I
0.000
ENSPTRG00000034554
Pan troglodytes
ENSPTRG00000034554
I
0.000
SFRS2_PANTR
Pan troglodytes
ENSPTRG00000009692
I
0.000
SRSF2
Dasypus novemcinctus
ENSDNOG00000000439
I
0.000
srsf2
Danio rerio
ENSDARG00000057484
I
0.000
SRSF2
Danio rerio
ENSDARG00000010906
I
0.000
ENSCSAVG00000009199
Ciona savignyi
ENSCSAVG00000009199
I
0.000
LOC100409845
Callithrix jacchus
ENSCJAG00000013412
I
0.000
LOC100407351
Callithrix jacchus
ENSCJAG00000004211
I
0.000
ENSCING00000004198
Ciona intestinalis
ENSCING00000004198
I
0.000
SRSF2
Choloepus hoffmanni
ENSCHOG00000014019
I
0.000
SRSF2
Canis familiaris
ENSCAFG00000005147
I
0.000
SFRS2_BOVIN
Bos taurus
ENSBTAG00000018258
I
0.000
SRSF2
Anolis carolinensis
ENSACAG00000008553
I
0.000
CPIJ007047
Culex quinquefasciatus
CPIJ007047
I
0.000
AGAP009742
Anopheles gambiae
AGAP009742
I
0.000
AAEL010340
Aedes aegypti
AAEL010340
I
0.000
DGIL_AUG5s1074g3t1
Acyrtosiphon pisum
DGIL_AUG5s1074g3t1
I
0.000
amel4_ncbi_hmm3241
Tribolium castaneum
amel4_ncbi_hmm3241
I
0.000
amel4_ncbi_hmm3241
Apis mellifera
amel4_ncbi_hmm3241
I
0.000
Srsf2
Dipodomys ordii
ENSDORG00000014460
I
0.000
CpipJ_CPIJ007047
Culex pipiens
CpipJ_CPIJ007047
I
0.000
ENSG00000180771
Homo sapiens
ENSG00000180771
I
0.000
ENSPPYG00000008668
Pongo pygmaeus
ENSPPYG00000008668
I
0.000
Q9DGK5_ORYLA
Oryzias latipes
ENSORLG00000018688
I
0.000
SRSF2
Oryzias latipes
ENSORLG00000001230
I
0.000
SRSF2
Oryctolagus cuniculus
ENSOCUG00000021840
I
0.000
SRSF2
Ornithorhynchus anatinus
ENSOANG00000002695
I
0.000
Srsf2
Mus musculus
ENSMUSG00000034120
I
0.000
SRSF2
Monodelphis domestica
ENSMODG00000001575
I
0.000
LOC707883
Macaca mulatta
ENSMMUG00000022413
I
0.000
ENSMMUG00000007639
Macaca mulatta
ENSMMUG00000007639
I
0.000
SRSF2
Myotis lucifugus
ENSMLUG00000009759
I
0.000
SRSF2
Microcebus murinus
ENSMICG00000016956
I
0.000
SRSF2
Meleagris gallopavo
ENSMGAG00000004083
I
0.000
SRSF2
Macropus eugenii
ENSMEUG00000016745
I
0.000
SRSF2
Loxodonta africana
ENSLAFG00000007469
I
0.000
SRSF2
Gorilla gorilla
ENSGGOG00000014378
I
0.000
SRSF2
Gasterosteus aculeatus
ENSGACG00000014884
I
0.000
SRSF2
Gasterosteus aculeatus
ENSGACG00000003105
I
0.000
SRSF2
Erinaceus europaeus
ENSEEUG00000009656
N
0.000