XP_785989.2 (Strongylocentrotus purpuratus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 XP_785989.2 T59232_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
SRSF2
M352_0.6 		Homo sapiens AGSAGAGUA SELEX
Cook et al.(2011)
953_7543047 		0.761
SRSF2
M332_0.6 		Homo sapiens UGUUCSAGWU SELEX
Cook et al.(2011)
791_10094314 		0.761
SRSF2
M274_0.6 		Homo sapiens GUUCGAGUA SELEX
Cook et al.(2011)
244_7543047 		0.761
SRSF2
M070_0.6 		Homo sapiens GGAGWD RNAcompete
Ray et al.(2013)
RNCMPT00072 		0.761
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
XP_785989.2 RRM 16 86

Links

Other RRM family RBPs
Other Strongylocentrotus purpuratus RBPs

72 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
XP_001180605.1 Strongylocentrotus purpuratus XP_001180605.1 I 1.000
XP_001180179.1 Strongylocentrotus purpuratus XP_001180179.1 I 0.986
XP_001180144.1 Strongylocentrotus purpuratus XP_001180144.1 I 0.986
XP_001198082.1 Strongylocentrotus purpuratus XP_001198082.1 I 0.986
XP_001198099.1 Strongylocentrotus purpuratus XP_001198099.1 I 0.986
amel4_ncbi_hmm3241 Tribolium castaneum amel4_ncbi_hmm3241 I 0.831
amel4_ncbi_hmm3241 Apis mellifera amel4_ncbi_hmm3241 I 0.831
DGIL_AUG5s1074g3t1 Acyrtosiphon pisum DGIL_AUG5s1074g3t1 I 0.817
Q9DGK5_ORYLA Oryzias latipes ENSORLG00000018688 I 0.803
ENSCSAVG00000009199 Ciona savignyi ENSCSAVG00000009199 I 0.803
estExt_fgenesh1_pm.C_490002 Capitella teleta estExt_fgenesh1_pm.C_490002 I 0.803
GH11678 Drosophila grimshawi FBgn0119158 I 0.789
GG10262 Drosophila erecta FBgn0102571 I 0.789
GI17122 Drosophila mojavensis FBgn0139866 I 0.789
GM26218 Drosophila sechellia FBgn0181073 I 0.789
GD22120 Drosophila simulans FBgn0193531 I 0.789
SRSF2 Oryzias latipes ENSORLG00000001230 I 0.789
GF15672 Drosophila ananassae FBgn0092696 I 0.789
SRSF2 Tetraodon nigroviridis ENSTNIG00000001280 I 0.789
SRSF2 Takifugu rubripes ENSTRUG00000018104 I 0.789
SC35 Drosophila melanogaster FBgn0040286 I 0.789
GA18884-RA Drosophila pseudoobscura FBgn0078884 I 0.789
GJ16161 Drosophila virilis FBgn0203346 I 0.789
GK14626 Drosophila willistoni FBgn0216632 I 0.789
fgenesh2_pg.scaffold_240000061 Branchiostoma floridae fgenesh2_pg.scaffold_240000061 I 0.789
srsf2 Danio rerio ENSDARG00000057484 I 0.789
AGAP009742 Anopheles gambiae AGAP009742 I 0.789
ENSCING00000004198 Ciona intestinalis ENSCING00000004198 I 0.789
SRSF2 Takifugu rubripes ENSTRUG00000002362 I 0.789
gw1.5.1039.1 Lottia gigantea gw1.5.1039.1 I 0.789
SRSF2 Gasterosteus aculeatus ENSGACG00000014884 I 0.789
SRSF2 Gasterosteus aculeatus ENSGACG00000003105 I 0.789
srsf2 Xenopus tropicalis ENSXETG00000025271 I 0.775
CPIJ007047 Culex quinquefasciatus CPIJ007047 I 0.775
AAEL010340 Aedes aegypti AAEL010340 I 0.775
e_gw1.120.82.1 Daphnia pulex e_gw1.120.82.1 I 0.775
AAH45229 Xenopus laevis AAH45229 I 0.775
CpipJ_CPIJ007047 Culex pipiens CpipJ_CPIJ007047 I 0.775
SRSF2 Danio rerio ENSDARG00000010906 I 0.775
GE12283 Drosophila yakuba FBgn0230039 I 0.761
estExt_Genewise1.C_sca_50520 Lottia gigantea estExt_Genewise1.C_sca_50520 I 0.761
SFRS2_PANTR Pan troglodytes ENSPTRG00000009692 I 0.761
SRSF2 Taeniopygia guttata ENSTGUG00000007799 I 0.761
SRSF2 Anolis carolinensis ENSACAG00000008553 I 0.761
SRSF2 Macropus eugenii ENSMEUG00000016745 I 0.761
SFRS2_BOVIN Bos taurus ENSBTAG00000018258 I 0.761
SRSF2 Gorilla gorilla ENSGGOG00000014378 I 0.761
SRSF2 Canis familiaris ENSCAFG00000005147 I 0.761
SRSF2 Dasypus novemcinctus ENSDNOG00000000439 I 0.761
LOC100409845 Callithrix jacchus ENSCJAG00000013412 I 0.761
SRSF2 Homo sapiens ENSG00000161547 D 0.761
Srsf2 Dipodomys ordii ENSDORG00000014460 I 0.761
SRSF2 Microcebus murinus ENSMICG00000016956 I 0.761
SRSF2 Pteropus vampyrus ENSPVAG00000014264 I 0.761
Sfrs2 Rattus norvegicus ENSRNOG00000000248 I 0.761
SRSF2 Tupaia belangeri ENSTBEG00000014339 I 0.761
ENSPPYG00000008668 Pongo pygmaeus ENSPPYG00000008668 I 0.761
SRSF2 Ornithorhynchus anatinus ENSOANG00000002695 I 0.761
LOC707883 Macaca mulatta ENSMMUG00000022413 I 0.761
SRSF2 Monodelphis domestica ENSMODG00000001575 I 0.761
Srsf2 Mus musculus ENSMUSG00000034120 I 0.761
SRSF2 Myotis lucifugus ENSMLUG00000009759 I 0.761
SRSF2 Choloepus hoffmanni ENSCHOG00000014019 I 0.746
ISCW001255 Ixodes scapularis ISCW001255 I 0.746
estExt_Genewise1Plus.C_1270032 Capitella teleta estExt_Genewise1Plus.C_1270032 I 0.746
XP_002161458.1 Hydra magnipapillata XP_002161458.1 I 0.746
Ame_R006395 Ailuropoda melanoleuca Ame_R006395 I 0.732
SRSF2 Meleagris gallopavo ENSMGAG00000004083 I 0.718
e_gw.91.104.1 Nematostella vectensis e_gw.91.104.1 I 0.718
e_gw.736.13.1 Nematostella vectensis e_gw.736.13.1 I 0.718
97732 Helobdella robusta 97732 I 0.704
SRSF2 Erinaceus europaeus ENSEEUG00000009656 N 0.704