CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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BICC1
(
Bos taurus
)
KH,SAM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00013 (KH_1)
PF00536 (SAM_1)
IPR018111
IPR021129
ENSBTAG00000010694
T22472_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSBTAP00000031316
KH
1
20
DPHIKVSGKKEDVKEAKEMI
ENSBTAP00000031316
KH
32
97
TLKMDVSHTEHSHVIGKGGNNIKKVMEETGCHIHFPDSNRNNQAEKSNQVSIAGQPAGVESARVRI
ENSBTAP00000031316
KH
124
166
PSIQHISQMYNISVSFKQRSRMYGATVIVRGSQNNTSAVKEGT
ENSBTAP00000031316
KH
184
246
STQLDIAAQHHLFMMGRNGSNIKHIMQRTGAQIHFPDPSNPQKKSTVYLQGTIESVCLARQYL
ENSBTAP00000031316
SAM
770
830
KGSDLPELFSKLGLGKYTDVFQQQEIDLQTFLTLTDQDLKELGITTFGARRKMLLAISELN
Links
Other
KH,SAM
family RBPs
Other
Bos taurus
RBPs
30 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
BICC1
Anolis carolinensis
ENSACAG00000001892
N
0.850
ENSPPYG00000002429
Pongo pygmaeus
ENSPPYG00000002429
N
0.881
BICC1
Pan troglodytes
ENSPTRG00000002520
N
0.881
BICC1
Pteropus vampyrus
ENSPVAG00000008004
N
0.804
Bicc1
Rattus norvegicus
ENSRNOG00000000614
N
0.870
BICC1
Sus scrofa
ENSSSCG00000010204
N
0.874
BICC1
Taeniopygia guttata
ENSTGUG00000005584
N
0.854
BICC1
Tarsius syrichta
ENSTSYG00000004527
N
0.871
BICC1
Tursiops truncatus
ENSTTRG00000017309
N
0.822
Ame_R016146
Ailuropoda melanoleuca
Ame_R016146
N
0.996
AAF69826
Xenopus laevis
AAF69826
N
0.826
AAH84957
Xenopus laevis
AAH84957
N
0.840
AAI70337
Xenopus laevis
AAI70337
N
0.830
Q5U4T7
Xenopus laevis
Q5U4T7
N
0.840
BICC1
Oryctolagus cuniculus
ENSOCUG00000013696
N
0.878
BICC1
Ornithorhynchus anatinus
ENSOANG00000013223
N
0.973
BICC1
Canis familiaris
ENSCAFG00000012331
N
0.996
BICC1
Choloepus hoffmanni
ENSCHOG00000010828
N
0.783
BICC1
Callithrix jacchus
ENSCJAG00000010639
N
0.996
BICC1
Cavia porcellus
ENSCPOG00000015585
N
0.874
BICC1
Equus caballus
ENSECAG00000013979
N
0.916
BICC1
Echinops telfairi
ENSETEG00000010754
N
0.770
BICC1
Homo sapiens
ENSG00000122870
N
0.881
BICC1
Gallus gallus
ENSGALG00000001847
N
0.965
BICC1
Gorilla gorilla
ENSGGOG00000005484
N
0.881
BICC1
Loxodonta africana
ENSLAFG00000007749
N
0.992
BICC1
Microcebus murinus
ENSMICG00000002045
N
0.881
BICC1
Macaca mulatta
ENSMMUG00000015750
N
0.881
Bicc1
Mus musculus
ENSMUSG00000014329
N
0.866
Q9IA00
Xenopus laevis
Q9IA00
N
0.826