CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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BICC1
(
Oryctolagus cuniculus
)
KH,SAM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00013 (KH_1)
PF00536 (SAM_1)
IPR018111
IPR021129
ENSOCUG00000013696
T22502_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSOCUP00000011794
KH
70
122
GRSGEDFFQKIMEETNTQIAWPSKLKIGAKSKKDPHIKVSGKKEDVKEAKEMI
ENSOCUP00000011794
KH
134
199
TLKMDVSHTEHSHVIGKGGNNIKKVMEETGCHIHFPDSNRNNQAEKSNQVSIAGQPAGVESARVRI
ENSOCUP00000011794
KH
226
268
PSIQHISQTYNISVSFKQRSRMYGATVIVRGSQNNTSAVKEGT
ENSOCUP00000011794
KH
286
348
STQLDIAAQHHLFMMGRNGSNIKHIMQRTGAQIHFPDPSSPQKKSTVYLQGTIESVCLARQYL
ENSOCUP00000011794
SAM
874
934
KGSDLPELFSKLGLGKYTDVFQQQEIDLQTFLTLTDQDLKELGITTFGARRKMLLAISELN
Links
Other
KH,SAM
family RBPs
Other
Oryctolagus cuniculus
RBPs
30 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
ENSPPYG00000002429
Pongo pygmaeus
ENSPPYG00000002429
N
0.997
BICC1
Homo sapiens
ENSG00000122870
N
0.997
BICC1
Gorilla gorilla
ENSGGOG00000005484
N
0.997
BICC1
Microcebus murinus
ENSMICG00000002045
N
0.997
BICC1
Macaca mulatta
ENSMMUG00000015750
N
0.997
BICC1
Pan troglodytes
ENSPTRG00000002520
N
0.997
BICC1
Cavia porcellus
ENSCPOG00000015585
N
0.990
BICC1
Sus scrofa
ENSSSCG00000010204
N
0.986
BICC1
Tarsius syrichta
ENSTSYG00000004527
N
0.986
BICC1
Taeniopygia guttata
ENSTGUG00000005584
N
0.965
BICC1
Anolis carolinensis
ENSACAG00000001892
N
0.962
BICC1
Equus caballus
ENSECAG00000013979
N
0.958
Bicc1
Mus musculus
ENSMUSG00000014329
N
0.955
AAH84957
Xenopus laevis
AAH84957
N
0.951
Q5U4T7
Xenopus laevis
Q5U4T7
N
0.951
AAI70337
Xenopus laevis
AAI70337
N
0.941
Q9IA00
Xenopus laevis
Q9IA00
N
0.938
AAF69826
Xenopus laevis
AAF69826
N
0.938
BICC1
Tursiops truncatus
ENSTTRG00000017309
N
0.934
BICC1
Ornithorhynchus anatinus
ENSOANG00000013223
N
0.927
BICC1
Pteropus vampyrus
ENSPVAG00000008004
N
0.916
Bicc1
Rattus norvegicus
ENSRNOG00000000614
N
0.913
BICC1
Choloepus hoffmanni
ENSCHOG00000010828
N
0.895
BICC1
Echinops telfairi
ENSETEG00000010754
N
0.882
Ame_R016146
Ailuropoda melanoleuca
Ame_R016146
N
0.881
BICC1
Callithrix jacchus
ENSCJAG00000010639
N
0.881
BICC1
Canis familiaris
ENSCAFG00000012331
N
0.881
BICC1
Loxodonta africana
ENSLAFG00000007749
N
0.878
BICC1
Bos taurus
ENSBTAG00000010694
N
0.878
BICC1
Gallus gallus
ENSGALG00000001847
N
0.855