CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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BICC1
(
Gallus gallus
)
KH,SAM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00013 (KH_1)
PF00536 (SAM_1)
IPR018111
IPR021129
ENSGALG00000001847
T22492_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSGALP00000002859
KH
1
20
DPHIKVSGKKENVKEAKEKI
ENSGALP00000002859
KH
32
97
TLKMDVSHTEHSHVIGKGGNNIKKVMEETGCHIHFPDSNRNNQAEKSNQVSIAGQPAGVESARVRI
ENSGALP00000002859
KH
121
166
PNSHTIQHISQTYNISVSFKQRSRMYGATVIVRGSQNNTSAVKEGT
ENSGALP00000002859
KH
184
246
STQLDIAAQHHLFMMGRNGSNIKHIMQRTGAQIHFPDPSNPQKKSTVYLQGTIESVCLARQYL
ENSGALP00000002859
SAM
773
832
GSDLPELFSKLGLGKYTDVFQQQEIDLQTFLTLTDQDLKELGITTFGARRKMLLAISELN
Links
Other
KH,SAM
family RBPs
Other
Gallus gallus
RBPs
30 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
BICC1
Anolis carolinensis
ENSACAG00000001892
N
0.861
ENSPPYG00000002429
Pongo pygmaeus
ENSPPYG00000002429
N
0.858
BICC1
Pan troglodytes
ENSPTRG00000002520
N
0.858
BICC1
Pteropus vampyrus
ENSPVAG00000008004
N
0.785
Bicc1
Rattus norvegicus
ENSRNOG00000000614
N
0.866
BICC1
Sus scrofa
ENSSSCG00000010204
N
0.851
BICC1
Taeniopygia guttata
ENSTGUG00000005584
N
0.868
BICC1
Tarsius syrichta
ENSTSYG00000004527
N
0.848
BICC1
Tursiops truncatus
ENSTTRG00000017309
N
0.799
Ame_R016146
Ailuropoda melanoleuca
Ame_R016146
N
0.969
AAF69826
Xenopus laevis
AAF69826
N
0.830
AAH84957
Xenopus laevis
AAH84957
N
0.844
AAI70337
Xenopus laevis
AAI70337
N
0.834
Q5U4T7
Xenopus laevis
Q5U4T7
N
0.844
BICC1
Oryctolagus cuniculus
ENSOCUG00000013696
N
0.855
BICC1
Ornithorhynchus anatinus
ENSOANG00000013223
N
0.977
BICC1
Bos taurus
ENSBTAG00000010694
N
0.965
BICC1
Canis familiaris
ENSCAFG00000012331
N
0.969
BICC1
Choloepus hoffmanni
ENSCHOG00000010828
N
0.765
BICC1
Callithrix jacchus
ENSCJAG00000010639
N
0.969
BICC1
Cavia porcellus
ENSCPOG00000015585
N
0.851
BICC1
Equus caballus
ENSECAG00000013979
N
0.892
BICC1
Echinops telfairi
ENSETEG00000010754
N
0.754
BICC1
Homo sapiens
ENSG00000122870
N
0.858
BICC1
Gorilla gorilla
ENSGGOG00000005484
N
0.858
BICC1
Loxodonta africana
ENSLAFG00000007749
N
0.965
BICC1
Microcebus murinus
ENSMICG00000002045
N
0.858
BICC1
Macaca mulatta
ENSMMUG00000015750
N
0.858
Bicc1
Mus musculus
ENSMUSG00000014329
N
0.859
Q9IA00
Xenopus laevis
Q9IA00
N
0.830