CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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Glyma11g14500.1
(
Glycine max
)
PUF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00806 (PUF)
IPR001313
Glyma11g14500.1
T24886_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
Glyma11g14500.1
PUF
688
722
EIVGHVVEFSADQYGSRFIQQKLETATTEEKKMVY
Glyma11g14500.1
PUF
724
757
EIMPHALALMTDVFGNYVVQKFFEHGLASQRREL
Glyma11g14500.1
PUF
760
794
KLLGHVLTLSLQMYGCRVIQKAIEVVDLDQKIEMV
Glyma11g14500.1
PUF
796
830
ELDGNVMRCVRDQNGNHVIQKCIECVPEDAIDFIV
Glyma11g14500.1
PUF
832
867
TFFDQVVTLSTHPYGCRVIQRVLEHCEDPTTQQKVM
Glyma11g14500.1
PUF
869
903
EILGAVSMLAQDQYGNYVVQHVLEHGKSHERSSII
Glyma11g14500.1
PUF
905
939
ELAGKIVQMSQQKFASNVVEKCLTFGGPSERQLLV
Glyma11g14500.1
PUF
952
981
LQAMMKDQFANYVVQKVLETCDDQQRELIL
Links
Other
PUF
family RBPs
Other
Glycine max
RBPs
78 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
Aqu1.220260
Amphimedon queenslandica
Aqu1.220260
N
0.000
fgenesh2_pg.scaffold_81000029
Branchiostoma floridae
fgenesh2_pg.scaffold_81000029
N
0.000