CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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AAEL010318
(
Aedes aegypti
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
AAEL010318
T32394_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
pAbp
M130_0.6
Drosophila melanogaster
GAAAAHV
RNAcompete
Ray et al.(2013)
RNCMPT00139
0.791
PABPC4
M042_0.6
Homo sapiens
AAAAAAR
RNAcompete
Ray et al.(2013)
RNCMPT00043
0.750
PABPC1
M349_0.6
Homo sapiens
ACDAAYM
SELEX
Cook et al.(2011)
950_7908267
0.743
PABPC1
M275_0.6
Homo sapiens
AAAAA
SELEX
Cook et al.(2011)
24_7908267
0.743
PABPC1
M146_0.6
Homo sapiens
ARAAAAM
RNAcompete
Ray et al.(2013)
RNCMPT00155
0.743
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
AAEL010318-PA
RRM
4
74
LYVGDLHADITEAILFEKFSSAGPVLSIRVCRDVVTRRSLGYAYVNFQQPADAERALDTMNFDLIKGRPIR
AAEL010318-PA
RRM
92
161
VFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQDEKGNSKGYGFVHFETEESANTSIEKVNGMLLNGKKVY
AAEL010318-PA
RRM
185
253
VYVKNFGDELNDETLKEMFEKYGTITSHRVMIKDGKSRGFGFVAFENPESAEHAVQELNGKELGEGKIL
AAEL010318-PA
RRM
288
356
LYVKNLDDSIDDERLRKEFSPFGTITSAKVMLEEGRSKGFGFVCFSAAEEATKAVTEMNGRIVGSKPLY
AAEL010318-PB
RRM
4
74
LYVGDLHADITEAILFEKFSSAGPVLSIRVCRDVVTRRSLGYAYVNFQQPADAERALDTMNFDLIKGRPIR
AAEL010318-PB
RRM
92
161
VFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQDEKGNSKGYGFVHFETEESANTSIEKVNGMLLNGKKVY
AAEL010318-PB
RRM
185
253
VYVKNFGDELNDETLKEMFEKYGTITSHRVMIKDGKSRGFGFVAFENPESAEHAVQELNGKELGEGKIL
AAEL010318-PB
RRM
288
356
LYVKNLDDSIDDERLRKEFSPFGTITSAKVMLEEGRSKGFGFVCFSAAEEATKAVTEMNGRIVGSKPLY
Links
Other
RRM
family RBPs
Other
Aedes aegypti
RBPs
140 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
fgenesh3_pg.105__14
Postia placenta
fgenesh3_pg.105__14
N
0.000
fgenesh3_pg.348__2
Postia placenta
fgenesh3_pg.348__2
N
0.000
fgenesh3_pg.359__1
Postia placenta
fgenesh3_pg.359__1
N
0.000
fgenesh3_pg.44__55
Postia placenta
fgenesh3_pg.44__55
N
0.000
fgenesh3_pg.49__68
Postia placenta
fgenesh3_pg.49__68
N
0.000
fgenesh3_pg.51__8
Postia placenta
fgenesh3_pg.51__8
N
0.000
fgenesh3_pg.53__89
Postia placenta
fgenesh3_pg.53__89
N
0.000
fgenesh3_pg.63__75
Postia placenta
fgenesh3_pg.63__75
N
0.000
fgenesh3_pg.647__1
Postia placenta
fgenesh3_pg.647__1
N
0.000
fgenesh3_pg.66__60
Postia placenta
fgenesh3_pg.66__60
N
0.000
fgenesh3_pg.7__151
Postia placenta
fgenesh3_pg.7__151
N
0.000
fgenesh3_pg.77__33
Postia placenta
fgenesh3_pg.77__33
N
0.000
fgenesh3_pg.89__23
Postia placenta
fgenesh3_pg.89__23
N
0.000
fgenesh3_pg.89__29
Postia placenta
fgenesh3_pg.89__29
N
0.000
fgenesh3_pg.900__1
Postia placenta
fgenesh3_pg.900__1
N
0.000
fgenesh3_pg.9__147
Postia placenta
fgenesh3_pg.9__147
N
0.000
fgenesh3_pg.326__2
Postia placenta
fgenesh3_pg.326__2
N
0.000
fgenesh3_pg.2__92
Postia placenta
fgenesh3_pg.2__92
N
0.000
fgenesh3_pg.282__8
Postia placenta
fgenesh3_pg.282__8
N
0.000
fgenesh3_pg.10__6
Postia placenta
fgenesh3_pg.10__6
N
0.000
fgenesh3_pg.107__20
Postia placenta
fgenesh3_pg.107__20
N
0.000
fgenesh3_pg.11__132
Postia placenta
fgenesh3_pg.11__132
N
0.000
fgenesh3_pg.116__47
Postia placenta
fgenesh3_pg.116__47
N
0.000
fgenesh3_pg.11__80
Postia placenta
fgenesh3_pg.11__80
N
0.000
fgenesh3_pg.121__36
Postia placenta
fgenesh3_pg.121__36
N
0.000
fgenesh3_pg.136__2
Postia placenta
fgenesh3_pg.136__2
N
0.000
fgenesh3_pg.150__7
Postia placenta
fgenesh3_pg.150__7
N
0.000
fgenesh3_pg.178__10
Postia placenta
fgenesh3_pg.178__10
N
0.000
fgenesh3_pg.19__17
Postia placenta
fgenesh3_pg.19__17
N
0.000
fgenesh3_pg.19__42
Postia placenta
fgenesh3_pg.19__42
N
0.000
fgenesh3_pg.194__2
Postia placenta
fgenesh3_pg.194__2
N
0.000
fgenesh3_pg.223__10
Postia placenta
fgenesh3_pg.223__10
N
0.000
fgenesh3_pg.264__1
Postia placenta
fgenesh3_pg.264__1
N
0.000
fgenesh3_pg.266__9
Postia placenta
fgenesh3_pg.266__9
N
0.000
fgenesh3_pg.9__2
Postia placenta
fgenesh3_pg.9__2
N
0.000