AAEL010318 (Aedes aegypti)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 AAEL010318 T32394_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
pAbp
M130_0.6 		Drosophila melanogaster GAAAAHV RNAcompete
Ray et al.(2013)
RNCMPT00139 		0.791
PABPC4
M042_0.6 		Homo sapiens AAAAAAR RNAcompete
Ray et al.(2013)
RNCMPT00043 		0.750
PABPC1
M349_0.6 		Homo sapiens ACDAAYM SELEX
Cook et al.(2011)
950_7908267 		0.743
PABPC1
M275_0.6 		Homo sapiens AAAAA SELEX
Cook et al.(2011)
24_7908267 		0.743
PABPC1
M146_0.6 		Homo sapiens ARAAAAM RNAcompete
Ray et al.(2013)
RNCMPT00155 		0.743
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
AAEL010318-PA RRM 4 74
AAEL010318-PA RRM 92 161
AAEL010318-PA RRM 185 253
AAEL010318-PA RRM 288 356
AAEL010318-PB RRM 4 74
AAEL010318-PB RRM 92 161
AAEL010318-PB RRM 185 253
AAEL010318-PB RRM 288 356

Links

Other RRM family RBPs
Other Aedes aegypti RBPs

140 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
PABPC1 Homo sapiens ENSG00000070756 D 0.749
pAbp Drosophila melanogaster FBgn0261619 D 0.804
PABPC4 Homo sapiens ENSG00000090621 D 0.760
PABPC4 Tetraodon nigroviridis ENSTNIG00000016902 I 0.753
ENSTRUG00000003767 Takifugu rubripes ENSTRUG00000003767 I 0.760
Q8QGJ7_FUGRU Takifugu rubripes ENSTRUG00000005907 I 0.756
PABPC1L Takifugu rubripes ENSTRUG00000011085 I 0.714
PABPC3 Takifugu rubripes ENSTRUG00000011577 I 0.753
ENSTSYG00000004229 Tarsius syrichta ENSTSYG00000004229 I 0.731
ENSTTRG00000004689 Tursiops truncatus ENSTTRG00000004689 I 0.749
pabpc1 Xenopus tropicalis ENSXETG00000006635 I 0.749
GA18673-RA Drosophila pseudoobscura FBgn0078673 I 0.798
GF12652 Drosophila ananassae FBgn0089688 I 0.812
GG21846 Drosophila erecta FBgn0114024 I 0.804
GH21052 Drosophila grimshawi FBgn0128514 I 0.823
GI18654 Drosophila mojavensis FBgn0141393 I 0.819
GL11548 Drosophila persimilis FBgn0149157 I 0.801
PABPC3 Tetraodon nigroviridis ENSTNIG00000013307 I 0.723
ENSTNIG00000009153 Tetraodon nigroviridis ENSTNIG00000009153 I 0.760
ENSPPYG00000001506 Pongo pygmaeus ENSPPYG00000001506 I 0.760
ENSPPYG00000005219 Pongo pygmaeus ENSPPYG00000005219 I 0.717
ENSPPYG00000018790 Pongo pygmaeus ENSPPYG00000018790 I 0.749
PABPC4 Pan troglodytes ENSPTRG00000000573 I 0.760
XR_023909.1 Pan troglodytes ENSPTRG00000020475 I 0.746
Q2VIP2_PANTR Pan troglodytes ENSPTRG00000022593 I 0.710
ENSPVAG00000016640 Pteropus vampyrus ENSPVAG00000016640 I 0.749
Pabpc1 Rattus norvegicus ENSRNOG00000008639 I 0.753
Pabpc2 Rattus norvegicus ENSRNOG00000014527 I 0.731
D4AC21_RAT Rattus norvegicus ENSRNOG00000015642 I 0.756
D3ZEY8_RAT Rattus norvegicus ENSRNOG00000028592 I 0.735
PABPC4 Sus scrofa ENSSSCG00000003660 I 0.756
ENSSSCG00000006063 Sus scrofa ENSSSCG00000006063 I 0.749
PABPC4 Taeniopygia guttata ENSTGUG00000001266 I 0.763
PABPC1L Taeniopygia guttata ENSTGUG00000005114 I 0.706
PABPC1 Taeniopygia guttata ENSTGUG00000012067 I 0.753
PABPC4 Oryzias latipes ENSORLG00000017479 I 0.770
GM21847 Drosophila sechellia FBgn0176724 I 0.804
XP_002156904.1 Hydra magnipapillata XP_002156904.1 I 0.730
XP_002156940.1 Hydra magnipapillata XP_002156940.1 I 0.730
XP_801795.2 Strongylocentrotus purpuratus XP_801795.2 I 0.726
AAA60936 Xenopus laevis AAA60936 I 0.753
AAH52100 Xenopus laevis AAH52100 I 0.756
AAH71118 Xenopus laevis AAH71118 I 0.707
AAH72110 Xenopus laevis AAH72110 I 0.739
AAH73435 Xenopus laevis AAH73435 I 0.760
AAH80020 Xenopus laevis AAH80020 I 0.703
AAI08463 Xenopus laevis AAI08463 I 0.739
AAK29408 Xenopus laevis AAK29408 I 0.703
CAA40721 Xenopus laevis CAA40721 I 0.756
P20965 Xenopus laevis P20965 I 0.756
Q6GR16 Xenopus laevis Q6GR16 I 0.707
Q6IP09 Xenopus laevis Q6IP09 I 0.739
XP_001177907.1 Strongylocentrotus purpuratus XP_001177907.1 I 0.726
Ame_R001741 Ailuropoda melanoleuca Ame_R001741 I 0.731
BGIBMGA003469 Bombyx mori BGIBMGA003469 I 0.851
GD11341 Drosophila simulans FBgn0183090 I 0.801
GJ21671 Drosophila virilis FBgn0208790 I 0.826
GK19652 Drosophila willistoni FBgn0221650 I 0.830
GE11925 Drosophila yakuba FBgn0229707 I 0.804
ISCW014211 Ixodes scapularis ISCW014211 I 0.791
PHUM617090 Pediculus humanus PHUM617090 I 0.836
pab-1 Caenorhabditis elegans Y106G6H.2 I 0.702
185682 Helobdella robusta 185682 I 0.733
BDE_estExt_fgenesh1_pg.C_380037 Daphnia pulex BDE_estExt_fgenesh1_pg.C_380037 I 0.766
e_gw1.115.135.1 Lottia gigantea e_gw1.115.135.1 I 0.744
e_gw.313.40.1 Branchiostoma floridae e_gw.313.40.1 I 0.751
estExt_Genewise1.C_1790010 Capitella teleta estExt_Genewise1.C_1790010 I 0.765
estExt_Genewise1.C_sca_1150143 Lottia gigantea estExt_Genewise1.C_sca_1150143 I 0.726
fgenesh1_pm.scaffold_278000002 Nematostella vectensis fgenesh1_pm.scaffold_278000002 I 0.734
gw.1.65.1 Branchiostoma floridae gw.1.65.1 I 0.751
Q98SP8 Xenopus laevis Q98SP8 I 0.703
Bm1_16080 Brugia malayi Bm1_16080 I 0.734
PABPC1L Anolis carolinensis ENSACAG00000011841 I 0.710
ENSACAG00000016470 Anolis carolinensis ENSACAG00000016470 I 0.753
A4IFC3_BOVIN Bos taurus ENSBTAG00000017125 I 0.756
ENSCAFG00000000567 Canis familiaris ENSCAFG00000000567 I 0.749
PABPC4 Canis familiaris ENSCAFG00000003081 I 0.756
ENSCING00000002796 Ciona intestinalis ENSCING00000002796 I 0.721
A6MKJ4_CALJA Callithrix jacchus ENSCJAG00000002512 I 0.760
LOC100413032 Callithrix jacchus ENSCJAG00000015833 I 0.749
LOC100411130 Callithrix jacchus ENSCJAG00000018953 I 0.728
PABPC4 Cavia porcellus ENSCPOG00000009552 I 0.760
ENSCSAVG00000004246 Ciona savignyi ENSCSAVG00000004246 I 0.712
pabpc1a Danio rerio ENSDARG00000017219 I 0.760
pabpc1b Danio rerio ENSDARG00000021140 I 0.750
pabpc4 Danio rerio ENSDARG00000059259 I 0.760
ENSACAG00000002544 Anolis carolinensis ENSACAG00000002544 I 0.714
CPIJ007980 Culex quinquefasciatus CPIJ007980 I 0.964
CBN04295 Caenorhabditis brenneri CBN04295 I 0.720
CpipJ_CPIJ007980 Culex pipiens CpipJ_CPIJ007980 I 0.964
LOAG_01058 Loa loa LOAG_01058 I 0.734
amel4_ncbi_hmm1364 Apis mellifera amel4_ncbi_hmm1364 I 0.879
amel4_ncbi_hmm1700 Apis mellifera amel4_ncbi_hmm1700 I 0.879
amel4_ncbi_hmm2036 Apis mellifera amel4_ncbi_hmm2036 I 0.879
DGIL_AUG5s1591g1t1 Acyrtosiphon pisum DGIL_AUG5s1591g1t1 I 0.775
DGIL_AUG5s5076g2t1 Acyrtosiphon pisum DGIL_AUG5s5076g2t1 I 0.800
DGIL_AUG5s9152g1t1 Acyrtosiphon pisum DGIL_AUG5s9152g1t1 I 0.775
nasonia_NCBI_hmm386743 Nasonia vitripennis nasonia_NCBI_hmm386743 I 0.871
nasonia_NCBI_hmm390743 Nasonia vitripennis nasonia_NCBI_hmm390743 I 0.871
nasonia_NCBI_hmm394743 Nasonia vitripennis nasonia_NCBI_hmm394743 I 0.871
AGAP011092 Anopheles gambiae AGAP011092 I 0.889
Bm1_06880 Brugia malayi Bm1_06880 I 0.734
LOC100054235 Equus caballus ENSECAG00000009396 I 0.756
PABPC4 Erinaceus europaeus ENSEEUG00000002962 I 0.746
PABPC1L Gasterosteus aculeatus ENSGACG00000002792 I 0.703
XM_001365232.1 Monodelphis domestica ENSMODG00000017657 I 0.750
Pabpc4 Mus musculus ENSMUSG00000011257 I 0.746
Pabpc1 Mus musculus ENSMUSG00000022283 I 0.753
Pabpc2 Mus musculus ENSMUSG00000051732 I 0.739
Gm10110 Mus musculus ENSMUSG00000062093 I 0.749
ENSOANG00000007307 Ornithorhynchus anatinus ENSOANG00000007307 I 0.753
ENSOANG00000010001 Ornithorhynchus anatinus ENSOANG00000010001 I 0.760
PABPC4 Oryctolagus cuniculus ENSOCUG00000000562 I 0.753
ENSOCUG00000004354 Oryctolagus cuniculus ENSOCUG00000004354 I 0.749
ENSOCUG00000023935 Oryctolagus cuniculus ENSOCUG00000023935 I 0.749
ENSOPRG00000009667 Ochotona princeps ENSOPRG00000009667 I 0.749
PABPC4 Ochotona princeps ENSOPRG00000011984 I 0.753
PABPC3 Oryzias latipes ENSORLG00000002691 I 0.749
ENSORLG00000003008 Oryzias latipes ENSORLG00000003008 I 0.739
PABPC1L Oryzias latipes ENSORLG00000010322 I 0.711
XM_001367383.1 Monodelphis domestica ENSMODG00000017105 I 0.717
PABPC1L Monodelphis domestica ENSMODG00000016198 I 0.703
PABPC3 Gasterosteus aculeatus ENSGACG00000003572 I 0.753
ENSGACG00000003771 Gasterosteus aculeatus ENSGACG00000003771 I 0.753
PABPC4 Gasterosteus aculeatus ENSGACG00000007179 I 0.756
PABPC4 Gallus gallus ENSGALG00000003800 I 0.760
PABPC1L Gallus gallus ENSGALG00000004123 I 0.710
PABPC4 Gorilla gorilla ENSGGOG00000004002 I 0.760
PABPC4 Loxodonta africana ENSLAFG00000000151 I 0.756
ENSLAFG00000013994 Loxodonta africana ENSLAFG00000013994 I 0.749
PABPC1L Meleagris gallopavo ENSMGAG00000003674 I 0.714
ENSMICG00000000431 Microcebus murinus ENSMICG00000000431 I 0.756
ENSMICG00000016633 Microcebus murinus ENSMICG00000016633 I 0.735
PABPC4 Macaca mulatta ENSMMUG00000007497 I 0.760
PABPC1 Macaca mulatta ENSMMUG00000017786 I 0.749
PABPC3 Macaca mulatta ENSMMUG00000020835 I 0.717
XR_030308.1 Monodelphis domestica ENSMODG00000006222 I 0.749
CBG02207 Caenorhabditis briggsae CBG02207 N 0.709
CBG07431 Caenorhabditis briggsae CBG07431 N 0.702