pAbp (Drosophila melanogaster)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 FBgn0261619 T44426_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
pAbp
M130_0.6		 Drosophila melanogaster GAAAAHV RNAcompete
Ray et al.(2013)
RNCMPT00139 		(Direct)

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M130_0.6 RRM 4 74
M130_0.6 RRM 92 161
M130_0.6 RRM 185 253
M130_0.6 RRM 289 358

RNA Binding Domains

Protein ID Domain From To Sequence
FBpp0085915 RRM 4 74
FBpp0085915 RRM 92 161
FBpp0085915 RRM 185 253
FBpp0085915 RRM 289 358
FBpp0085916 RRM 4 74
FBpp0085916 RRM 92 161
FBpp0085916 RRM 185 253
FBpp0085916 RRM 289 358
FBpp0085917 RRM 4 74
FBpp0085917 RRM 92 161
FBpp0085917 RRM 185 253
FBpp0085917 RRM 289 358
FBpp0085918 RRM 4 74
FBpp0085918 RRM 92 161
FBpp0085918 RRM 185 253
FBpp0085918 RRM 289 358
FBpp0085919 RRM 4 74
FBpp0085919 RRM 92 161
FBpp0085919 RRM 185 253
FBpp0085919 RRM 289 358
FBpp0085920 RRM 4 74
FBpp0085920 RRM 92 161
FBpp0085920 RRM 185 253
FBpp0085920 RRM 289 358
FBpp0085921 RRM 4 74
FBpp0085921 RRM 92 161
FBpp0085921 RRM 185 253
FBpp0085921 RRM 289 358
FBpp0085922 RRM 4 74
FBpp0085922 RRM 92 161
FBpp0085922 RRM 185 253
FBpp0085922 RRM 289 358

Links

Other RRM family RBPs
Other Drosophila melanogaster RBPs

59 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
GM21847 Drosophila sechellia FBgn0176724 I 1.000
GD11341 Drosophila simulans FBgn0183090 I 0.996
GE11925 Drosophila yakuba FBgn0229707 I 0.989
GG21846 Drosophila erecta FBgn0114024 I 0.989
GF12652 Drosophila ananassae FBgn0089688 I 0.929
GJ21671 Drosophila virilis FBgn0208790 I 0.918
GK19652 Drosophila willistoni FBgn0221650 I 0.918
GL11548 Drosophila persimilis FBgn0149157 I 0.915
GI18654 Drosophila mojavensis FBgn0141393 I 0.911
GA18673-RA Drosophila pseudoobscura FBgn0078673 I 0.911
GH21052 Drosophila grimshawi FBgn0128514 I 0.904
AAEL010318 Aedes aegypti AAEL010318 I 0.804
CpipJ_CPIJ007980 Culex pipiens CpipJ_CPIJ007980 I 0.786
CPIJ007980 Culex quinquefasciatus CPIJ007980 I 0.786
AGAP011092 Anopheles gambiae AGAP011092 I 0.783
PHUM617090 Pediculus humanus PHUM617090 I 0.780
nasonia_NCBI_hmm386743 Nasonia vitripennis nasonia_NCBI_hmm386743 I 0.779
nasonia_NCBI_hmm390743 Nasonia vitripennis nasonia_NCBI_hmm390743 I 0.779
nasonia_NCBI_hmm394743 Nasonia vitripennis nasonia_NCBI_hmm394743 I 0.779
amel4_ncbi_hmm1700 Apis mellifera amel4_ncbi_hmm1700 I 0.779
amel4_ncbi_hmm2036 Apis mellifera amel4_ncbi_hmm2036 I 0.779
amel4_ncbi_hmm1364 Apis mellifera amel4_ncbi_hmm1364 I 0.779
BGIBMGA003469 Bombyx mori BGIBMGA003469 I 0.759
ISCW014211 Ixodes scapularis ISCW014211 I 0.752
DGIL_AUG5s5076g2t1 Acyrtosiphon pisum DGIL_AUG5s5076g2t1 I 0.725
BDE_estExt_fgenesh1_pg.C_380037 Daphnia pulex BDE_estExt_fgenesh1_pg.C_380037 I 0.723
AAH73435 Xenopus laevis AAH73435 I 0.717
ENSOANG00000010001 Ornithorhynchus anatinus ENSOANG00000010001 I 0.714
PABPC4 Gallus gallus ENSGALG00000003800 I 0.710
estExt_Genewise1.C_1790010 Capitella teleta estExt_Genewise1.C_1790010 I 0.709
DGIL_AUG5s9152g1t1 Acyrtosiphon pisum DGIL_AUG5s9152g1t1 I 0.707
CBN04295 Caenorhabditis brenneri CBN04295 I 0.706
Bm1_16080 Brugia malayi Bm1_16080 I 0.706
Bm1_06880 Brugia malayi Bm1_06880 I 0.706
LOAG_01058 Loa loa LOAG_01058 I 0.706
XM_001365232.1 Monodelphis domestica ENSMODG00000017657 I 0.704
PABPC4 Taeniopygia guttata ENSTGUG00000001266 I 0.704
D4AC21_RAT Rattus norvegicus ENSRNOG00000015642 I 0.704
pabpc1 Xenopus tropicalis ENSXETG00000006635 I 0.704
pab-1 Caenorhabditis elegans Y106G6H.2 I 0.702
e_gw1.115.135.1 Lottia gigantea e_gw1.115.135.1 I 0.702
PABPC4 Sus scrofa ENSSSCG00000003660 I 0.701
A4IFC3_BOVIN Bos taurus ENSBTAG00000017125 I 0.701
A6MKJ4_CALJA Callithrix jacchus ENSCJAG00000002512 I 0.701
PABPC4 Cavia porcellus ENSCPOG00000009552 I 0.701
PABPC4 Canis familiaris ENSCAFG00000003081 I 0.701
P20965 Xenopus laevis P20965 I 0.701
AAH52100 Xenopus laevis AAH52100 I 0.701
CAA40721 Xenopus laevis CAA40721 I 0.701
PABPC4 Pan troglodytes ENSPTRG00000000573 I 0.701
LOC100054235 Equus caballus ENSECAG00000009396 I 0.701
ENSMICG00000000431 Microcebus murinus ENSMICG00000000431 I 0.701
PABPC4 Macaca mulatta ENSMMUG00000007497 I 0.701
PABPC4 Homo sapiens ENSG00000090621 D 0.701
PABPC4 Loxodonta africana ENSLAFG00000000151 I 0.701
PABPC4 Gorilla gorilla ENSGGOG00000004002 I 0.701
ENSPPYG00000001506 Pongo pygmaeus ENSPPYG00000001506 I 0.701
DGIL_AUG5s1591g1t1 Acyrtosiphon pisum DGIL_AUG5s1591g1t1 I 0.700