CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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LOC100397230
(
Callithrix jacchus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSCJAG00000008143
T35548_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSCJAP00000008949
RRM
16
85
LFIGGLSFETTDESLRSHFEQWGRLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVE
Links
Other
RRM
family RBPs
Other
Callithrix jacchus
RBPs
6 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
A6H7E4_BOVIN
Bos taurus
ENSBTAG00000003915
N
0.000
larp6
Xenopus tropicalis
ENSXETG00000020340
N
0.000
LARP6
Tupaia belangeri
ENSTBEG00000015077
N
0.000
LARP6
Sus scrofa
ENSSSCG00000004974
N
0.000
LARP6
Pteropus vampyrus
ENSPVAG00000005618
N
0.000
LARP6
Pan troglodytes
ENSPTRG00000007234
N
0.000
ENSPPYG00000006604
Pongo pygmaeus
ENSPPYG00000006604
N
0.000
LARP6
Otolemur garnettii
ENSOGAG00000000522
N
0.000
LARP6
Macaca mulatta
ENSMMUG00000004429
N
0.000
LARP6
Microcebus murinus
ENSMICG00000011234
N
0.000
LARP6
Gorilla gorilla
ENSGGOG00000024151
N
0.000
LARP6
Homo sapiens
ENSG00000166173
N
0.000
LOC100064277
Equus caballus
ENSECAG00000014190
N
0.000
LARP6
Callithrix jacchus
ENSCJAG00000018642
N
0.000
LARP6
Canis familiaris
ENSCAFG00000017616
N
0.000
AAI06386
Xenopus laevis
AAI06386
N
0.000