CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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LOC100397230
(
Callithrix jacchus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSCJAG00000008143
T35548_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSCJAP00000008949
RRM
16
85
LFIGGLSFETTDESLRSHFEQWGRLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVE
Links
Other
RRM
family RBPs
Other
Callithrix jacchus
RBPs
6 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
ENSG00000215492
Homo sapiens
ENSG00000215492
I
0.986
LOC100397230
Callithrix jacchus
ENSCJAG00000004122
N
0.943
HNRNPA3
Ornithorhynchus anatinus
ENSOANG00000008622
N
0.886
ENSPPYG00000025850
Pongo pygmaeus
ENSPPYG00000025850
N
0.829
LOC100397230
Callithrix jacchus
ENSCJAG00000008744
N
0.787
ENSMODG00000023422
Monodelphis domestica
ENSMODG00000023422
I
0.720