ENSCSAVG00000004246 (Ciona savignyi)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSCSAVG00000004246 T35972_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PABPC1
M349_0.6 		Homo sapiens ACDAAYM SELEX
Cook et al.(2011)
950_7908267 		0.735
PABPC1
M275_0.6 		Homo sapiens AAAAA SELEX
Cook et al.(2011)
24_7908267 		0.735
PABPC1
M146_0.6 		Homo sapiens ARAAAAM RNAcompete
Ray et al.(2013)
RNCMPT00155 		0.735
PABPC4
M042_0.6 		Homo sapiens AAAAAAR RNAcompete
Ray et al.(2013)
RNCMPT00043 		0.728
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCSAVP00000007099 RRM 30 98
ENSCSAVP00000007099 RRM 122 151
ENSCSAVP00000007100 RRM 15 85
ENSCSAVP00000007100 RRM 103 171
ENSCSAVP00000007100 RRM 195 264
ENSCSAVP00000007100 RRM 297 365
ENSCSAVP00000007101 RRM 17 87
ENSCSAVP00000007101 RRM 105 173
ENSCSAVP00000007101 RRM 197 266
ENSCSAVP00000007101 RRM 301 369
ENSCSAVP00000007102 RRM 1 70
ENSCSAVP00000007102 RRM 88 156
ENSCSAVP00000007102 RRM 180 249
ENSCSAVP00000007102 RRM 282 350
ENSCSAVP00000007103 RRM 13 83
ENSCSAVP00000007103 RRM 101 169
ENSCSAVP00000007103 RRM 193 262
ENSCSAVP00000007103 RRM 295 363

Links

Other RRM family RBPs
Other Ciona savignyi RBPs

127 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
RBM33 Bos taurus ENSBTAG00000010243 N 0.000
Rbm33 Mus musculus ENSMUSG00000048271 N 0.000
RBM33 Oryctolagus cuniculus ENSOCUG00000012142 N 0.000
ENSOGAG00000000174 Otolemur garnettii ENSOGAG00000000174 N 0.000
RBM33 Ochotona princeps ENSOPRG00000014522 N 0.000
RBM33 Procavia capensis ENSPCAG00000006296 N 0.000
ENSPPYG00000018216 Pongo pygmaeus ENSPPYG00000018216 N 0.000
RBM33 Pan troglodytes ENSPTRG00000019911 N 0.000
RBM33 Pteropus vampyrus ENSPVAG00000000221 N 0.000
Rbm33 Rattus norvegicus ENSRNOG00000006718 N 0.000
RBM33 Sus scrofa ENSSSCG00000016417 N 0.000
RBM33 Taeniopygia guttata ENSTGUG00000000696 N 0.000
RBM33 Tarsius syrichta ENSTSYG00000007529 N 0.000
NP_001017336.1 Xenopus tropicalis ENSXETG00000013498 N 0.000
ENSMODG00000005006 Monodelphis domestica ENSMODG00000005006 N 0.000
ENSMMUG00000007353 Macaca mulatta ENSMMUG00000007353 N 0.000
ENSMICG00000002086 Microcebus murinus ENSMICG00000002086 N 0.000
ENSCAFG00000005100 Canis familiaris ENSCAFG00000005100 N 0.000
RBM33 Choloepus hoffmanni ENSCHOG00000004031 N 0.000
LOC100395960 Callithrix jacchus ENSCJAG00000020427 N 0.000
RBM33 Cavia porcellus ENSCPOG00000011852 N 0.000
Rbm33 Dipodomys ordii ENSDORG00000013758 N 0.000
ENSECAG00000022306 Equus caballus ENSECAG00000022306 N 0.000
RBM33 Felis catus ENSFCAG00000006602 N 0.000
RBM33 Homo sapiens ENSG00000184863 N 0.000
RBM33 Gallus gallus ENSGALG00000006372 N 0.000
RBM33 Gorilla gorilla ENSGGOG00000003382 N 0.000
RBM33 Loxodonta africana ENSLAFG00000015795 N 0.000
RBM33 Macropus eugenii ENSMEUG00000010548 N 0.000
RBM33 Meleagris gallopavo ENSMGAG00000004903 N 0.000
Ame_R017769 Ailuropoda melanoleuca Ame_R017769 N 0.000