CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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RBM33
(
Sus scrofa
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSSSCG00000016417
T41535_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSSSCP00000017395
RRM
1139
1203
VSVEGLSSSTTDAQLKSLLVSVGPIQSLQMLPQQRKAIAKFKEPAHALAFQQKFHRHMIDLSHIN
ENSSSCP00000017396
RRM
1093
1157
VSVEGLSSSTTDAQLKSLLVSVGPIQSLQMLPQQRKAIAKFKEPAHALAFQQKFHRHMIDLSHIN
Links
Other
RRM
family RBPs
Other
Sus scrofa
RBPs
32 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
ENSMICG00000002086
Microcebus murinus
ENSMICG00000002086
N
0.985
RBM33
Gorilla gorilla
ENSGGOG00000003382
N
0.985
ENSMMUG00000007353
Macaca mulatta
ENSMMUG00000007353
N
0.985
RBM33
Oryctolagus cuniculus
ENSOCUG00000012142
N
0.985
ENSPPYG00000018216
Pongo pygmaeus
ENSPPYG00000018216
N
0.985
RBM33
Ochotona princeps
ENSOPRG00000014522
N
0.985
ENSOGAG00000000174
Otolemur garnettii
ENSOGAG00000000174
N
0.985
RBM33
Pan troglodytes
ENSPTRG00000019911
N
0.985
RBM33
Homo sapiens
ENSG00000184863
N
0.985
RBM33
Tursiops truncatus
ENSTTRG00000013715
N
0.985
RBM33
Bos taurus
ENSBTAG00000010243
N
0.985
LOC100395960
Callithrix jacchus
ENSCJAG00000020427
N
0.985
Rbm33
Dipodomys ordii
ENSDORG00000013758
N
0.969
RBM33
Cavia porcellus
ENSCPOG00000011852
N
0.969
RBM33
Tarsius syrichta
ENSTSYG00000007529
N
0.969
Rbm33
Rattus norvegicus
ENSRNOG00000006718
N
0.969
ENSECAG00000022306
Equus caballus
ENSECAG00000022306
N
0.969
Rbm33
Mus musculus
ENSMUSG00000048271
N
0.969
RBM33
Felis catus
ENSFCAG00000006602
N
0.969
RBM33
Taeniopygia guttata
ENSTGUG00000000696
N
0.954
RBM33
Procavia capensis
ENSPCAG00000006296
N
0.954
RBM33
Pteropus vampyrus
ENSPVAG00000000221
N
0.954
ENSCAFG00000005100
Canis familiaris
ENSCAFG00000005100
N
0.954
RBM33
Choloepus hoffmanni
ENSCHOG00000004031
N
0.954
RBM33
Loxodonta africana
ENSLAFG00000015795
N
0.954
RBM33
Macropus eugenii
ENSMEUG00000010548
N
0.954
Ame_R017769
Ailuropoda melanoleuca
Ame_R017769
N
0.954
ENSMODG00000005006
Monodelphis domestica
ENSMODG00000005006
N
0.954
RBM33
Gallus gallus
ENSGALG00000006372
N
0.924
RBM33
Meleagris gallopavo
ENSMGAG00000004903
N
0.924
NP_001017336.1
Xenopus tropicalis
ENSXETG00000013498
N
0.831