CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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NCL
(
Erinaceus europaeus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSEEUG00000005913
T36775_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
NCL
M245_0.6
Homo sapiens
CCGAAAKCCCGAAGYAGG
SELEX
Cook et al.(2011)
1004_8676391
0.926
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSEEUP00000005396
RRM
303
371
LFVGNLNFNKTAPELKTGISDVFAKNDIAVVDVRIGMSRKFGYVDLESAEDLEKALELTGLKIFGNEIK
ENSEEUP00000005396
RRM
389
454
LLAKNLPYKLTQEELKEIFEDAVDIRLVSRDGKSKGMAYIEFKTEAEAEKNFEEKQGTEVDGRSIS
ENSEEUP00000005396
RRM
481
547
LVLSNLSYSATEETLQEVFEKATNIKVPQNQNGKSKGYAFIEFASNEDAREALNSCNKKEIEGRAIR
ENSEEUP00000005396
RRM
567
634
LFVKGLSEETTEETLKESFDGSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVT
Links
Other
RRM
family RBPs
Other
Erinaceus europaeus
RBPs
34 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
LOC_Os01g25839
Oryza sativa
LOC_Os01g25839
N
0.000
LOC_Os07g15890
Oryza sativa
LOC_Os07g15890
N
0.000
LOC_Os07g17440
Oryza sativa
LOC_Os07g17440
N
0.000
LOC_Os08g07610
Oryza sativa
LOC_Os08g07610
N
0.000
LOC_Os08g17750
Oryza sativa
LOC_Os08g17750
N
0.000
LOC_Os09g14940
Oryza sativa
LOC_Os09g14940
N
0.000
LOC_Os09g14990
Oryza sativa
LOC_Os09g14990
N
0.000
LOC_Os11g18580
Oryza sativa
LOC_Os11g18580
N
0.000
LOC_Os11g20190
Oryza sativa
LOC_Os11g20190
N
0.000
LOC_Os11g22600
Oryza sativa
LOC_Os11g22600
N
0.000
LOC_Os12g16060
Oryza sativa
LOC_Os12g16060
N
0.000
LOC_Os12g25734
Oryza sativa
LOC_Os12g25734
N
0.000
LOC_Os06g28140
Oryza sativa
LOC_Os06g28140
N
0.000
LOC_Os06g24440
Oryza sativa
LOC_Os06g24440
N
0.000
LOC_Os06g22090
Oryza sativa
LOC_Os06g22090
N
0.000
LOC_Os01g31510
Oryza sativa
LOC_Os01g31510
N
0.000
LOC_Os02g25480
Oryza sativa
LOC_Os02g25480
N
0.000
LOC_Os02g33960
Oryza sativa
LOC_Os02g33960
N
0.000
LOC_Os03g35560
Oryza sativa
LOC_Os03g35560
N
0.000
LOC_Os03g39400
Oryza sativa
LOC_Os03g39400
N
0.000
LOC_Os04g08580
Oryza sativa
LOC_Os04g08580
N
0.000
LOC_Os04g21410
Oryza sativa
LOC_Os04g21410
N
0.000
LOC_Os04g27290
Oryza sativa
LOC_Os04g27290
N
0.000
LOC_Os05g17120
Oryza sativa
LOC_Os05g17120
N
0.000
LOC_Os05g17750
Oryza sativa
LOC_Os05g17750
N
0.000
LOC_Os05g24430
Oryza sativa
LOC_Os05g24430
N
0.000
LOC_Os12g32440
Oryza sativa
LOC_Os12g32440
N
0.000