NCL (Erinaceus europaeus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSEEUG00000005913 T36775_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
NCL
M245_0.6 		Homo sapiens CCGAAAKCCCGAAGYAGG SELEX
Cook et al.(2011)
1004_8676391 		0.926
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSEEUP00000005396 RRM 303 371
ENSEEUP00000005396 RRM 389 454
ENSEEUP00000005396 RRM 481 547
ENSEEUP00000005396 RRM 567 634

Links

Other RRM family RBPs
Other Erinaceus europaeus RBPs

34 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
LOC_Os01g25839 Oryza sativa LOC_Os01g25839 N 0.000
LOC_Os07g15890 Oryza sativa LOC_Os07g15890 N 0.000
LOC_Os07g17440 Oryza sativa LOC_Os07g17440 N 0.000
LOC_Os08g07610 Oryza sativa LOC_Os08g07610 N 0.000
LOC_Os08g17750 Oryza sativa LOC_Os08g17750 N 0.000
LOC_Os09g14940 Oryza sativa LOC_Os09g14940 N 0.000
LOC_Os09g14990 Oryza sativa LOC_Os09g14990 N 0.000
LOC_Os11g18580 Oryza sativa LOC_Os11g18580 N 0.000
LOC_Os11g20190 Oryza sativa LOC_Os11g20190 N 0.000
LOC_Os11g22600 Oryza sativa LOC_Os11g22600 N 0.000
LOC_Os12g16060 Oryza sativa LOC_Os12g16060 N 0.000
LOC_Os12g25734 Oryza sativa LOC_Os12g25734 N 0.000
LOC_Os06g28140 Oryza sativa LOC_Os06g28140 N 0.000
LOC_Os06g24440 Oryza sativa LOC_Os06g24440 N 0.000
LOC_Os06g22090 Oryza sativa LOC_Os06g22090 N 0.000
LOC_Os01g31510 Oryza sativa LOC_Os01g31510 N 0.000
LOC_Os02g25480 Oryza sativa LOC_Os02g25480 N 0.000
LOC_Os02g33960 Oryza sativa LOC_Os02g33960 N 0.000
LOC_Os03g35560 Oryza sativa LOC_Os03g35560 N 0.000
LOC_Os03g39400 Oryza sativa LOC_Os03g39400 N 0.000
LOC_Os04g08580 Oryza sativa LOC_Os04g08580 N 0.000
LOC_Os04g21410 Oryza sativa LOC_Os04g21410 N 0.000
LOC_Os04g27290 Oryza sativa LOC_Os04g27290 N 0.000
LOC_Os05g17120 Oryza sativa LOC_Os05g17120 N 0.000
LOC_Os05g17750 Oryza sativa LOC_Os05g17750 N 0.000
LOC_Os05g24430 Oryza sativa LOC_Os05g24430 N 0.000
LOC_Os12g32440 Oryza sativa LOC_Os12g32440 N 0.000