NCL (Erinaceus europaeus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSEEUG00000005913 T36775_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
NCL
M245_0.6 		Homo sapiens CCGAAAKCCCGAAGYAGG SELEX
Cook et al.(2011)
1004_8676391 		0.926
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSEEUP00000005396 RRM 303 371
ENSEEUP00000005396 RRM 389 454
ENSEEUP00000005396 RRM 481 547
ENSEEUP00000005396 RRM 567 634

Links

Other RRM family RBPs
Other Erinaceus europaeus RBPs

34 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
NCL Pan troglodytes ENSPTRG00000013025 I 0.926
NCL Gorilla gorilla ENSGGOG00000004300 I 0.926
NCL Homo sapiens ENSG00000115053 D 0.926
NCL Macaca mulatta ENSMMUG00000018094 I 0.926
NCL Pteropus vampyrus ENSPVAG00000000297 I 0.926
NCL Tarsius syrichta ENSTSYG00000004355 I 0.922
NCL Canis familiaris ENSCAFG00000011037 I 0.922
LOC100395223 Callithrix jacchus ENSCJAG00000013538 I 0.922
NCL Bos taurus ENSBTAG00000016174 I 0.919
NCL Oryctolagus cuniculus ENSOCUG00000004312 I 0.919
NCL Tursiops truncatus ENSTTRG00000009094 I 0.915
Ame_R005385 Ailuropoda melanoleuca Ame_R005385 I 0.915
Q6X9Z0_HORSE Equus caballus ENSECAG00000021868 I 0.907
ENSBTAG00000026909 Bos taurus ENSBTAG00000026909 I 0.900
NCL Microcebus murinus ENSMICG00000002538 I 0.893
ENSETEG00000014756 Echinops telfairi ENSETEG00000014756 I 0.863
ENSETEG00000018937 Echinops telfairi ENSETEG00000018937 I 0.863
Ncl Rattus norvegicus ENSRNOG00000018273 I 0.844
ENSRNOG00000008664 Rattus norvegicus ENSRNOG00000008664 I 0.841
Ncl Mus musculus ENSMUSG00000026234 I 0.837
Ncl Dipodomys ordii ENSDORG00000012513 I 0.819
ENSPPYG00000013265 Pongo pygmaeus ENSPPYG00000013265 I 0.804
NCL Cavia porcellus ENSCPOG00000001034 I 0.796
NCL Ornithorhynchus anatinus ENSOANG00000008732 I 0.793
ENSSSCG00000016275 Sus scrofa ENSSSCG00000016275 I 0.793
NCL Loxodonta africana ENSLAFG00000013061 I 0.785
NCL Vicugna pacos ENSVPAG00000001796 I 0.781
NCL Macropus eugenii ENSMEUG00000012335 I 0.779
NCL Monodelphis domestica ENSMODG00000002470 I 0.775
ENSTBEG00000001546 Tupaia belangeri ENSTBEG00000001546 I 0.767
ENSTBEG00000002469 Tupaia belangeri ENSTBEG00000002469 I 0.763
NCL Sorex araneus ENSSARG00000010007 I 0.715
NCL Choloepus hoffmanni ENSCHOG00000012860 I 0.704
NCL Anolis carolinensis ENSACAG00000001006 N 0.701