CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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ENSFCAG00000002888
(
Felis catus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSFCAG00000002888
T37056_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
Fusip1
M088_0.6
Homo sapiens
AGAGAVV
RNAcompete
Ray et al.(2013)
RNCMPT00090
0.817
Fusip1
M087_0.6
Homo sapiens
AGAGARR
RNAcompete
Ray et al.(2013)
RNCMPT00089
0.817
Fusip1
M086_0.6
Homo sapiens
ARAGRRR
RNAcompete
Ray et al.(2013)
RNCMPT00088
0.817
Fusip1
M019_0.6
Homo sapiens
AGAGAVM
RNAcompete
Ray et al.(2013)
RNCMPT00019
0.817
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSFCAP00000002659
RRM
1
60
PEDLRREFGRYGPIVDVYIPLDFYTRRPRGFAYVQFEDVRDAEDALHNLDRKWICGRQIE
Links
Other
RRM
family RBPs
Other
Felis catus
RBPs
74 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
SLIRP_BOVIN
Bos taurus
ENSBTAG00000008135
N
0.000
C14orf156
Canis familiaris
ENSCAFG00000017230
N
0.000
LOC100052429
Equus caballus
ENSECAG00000000712
N
0.000
1810035L17Rik
Mus musculus
ENSMUSG00000021040
N
0.000
C14orf156
Oryctolagus cuniculus
ENSOCUG00000009713
N
0.000
C14orf156
Ochotona princeps
ENSOPRG00000007560
N
0.000
C14orf156
Vicugna pacos
ENSVPAG00000001781
N
0.000
Ame_R014974
Ailuropoda melanoleuca
Ame_R014974
N
0.000