CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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1810035L17Rik
(
Mus musculus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSMUSG00000021040
T39254_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSMUSP00000076673
RRM
19
80
AFVRKIPWTAAASELREHFAQFGHDKETGFHRGMGWVQFSSQEELQNALQQEHHIIDGVKIH
ENSMUSP00000124174
RRM
21
90
AFVRKIPWTAAASELREHFAQFGHVRRCTVPFDKETGFHRGMGWVQFSSQEELQNALQQEHHIIDGVKVS
ENSMUSP00000125341
RRM
21
90
AFVRKIPWTAAASELREHFAQFGHVRRCTVPFDKETGFHRGMGWVQFSSQEELQNALQQEHHIIDGVKIH
ENSMUSP00000125727
RRM
16
60
AFVRKIPWTAAASELREHFAQFGHVRRCTVPFRLAFTEAWVGFSF
Links
Other
RRM
family RBPs
Other
Mus musculus
RBPs
23 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
LOC688717
Rattus norvegicus
ENSRNOG00000012314
N
0.943
C14orf156
Canis familiaris
ENSCAFG00000017230
N
0.900
Ame_R014974
Ailuropoda melanoleuca
Ame_R014974
N
0.886
C14orf156
Oryctolagus cuniculus
ENSOCUG00000009713
N
0.886
LOC100405163
Callithrix jacchus
ENSCJAG00000016946
N
0.871
C14orf156
Ochotona princeps
ENSOPRG00000007560
N
0.871
LOC100052429
Equus caballus
ENSECAG00000000712
N
0.871
SLIRP_BOVIN
Bos taurus
ENSBTAG00000008135
N
0.857
C14orf156
Homo sapiens
ENSG00000119705
N
0.829
C14orf156
Microcebus murinus
ENSMICG00000012080
N
0.829
C14orf156
Gorilla gorilla
ENSGGOG00000011059
N
0.829
C14orf156
Vicugna pacos
ENSVPAG00000001781
N
0.829
C14orf156
Spermophilus tridecemlineatus
ENSSTOG00000003274
N
0.829
C14orf156
Pan troglodytes
ENSPTRG00000030691
N
0.829
C14orf156
Cavia porcellus
ENSCPOG00000001500
N
0.814
C14orf156
Otolemur garnettii
ENSOGAG00000006933
N
0.800
C14orf156
Tupaia belangeri
ENSTBEG00000013979
N
0.792
ENSPPYG00000006030
Pongo pygmaeus
ENSPPYG00000006030
N
0.786
C14orf156
Echinops telfairi
ENSETEG00000010345
N
0.729
C14orf156
Erinaceus europaeus
ENSEEUG00000007257
N
0.714
C14orf156
Ornithorhynchus anatinus
ENSOANG00000022366
N
0.700
C14orf156
Tursiops truncatus
ENSTTRG00000009328
N
0.700