CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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RBM42
(
Felis catus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSFCAG00000006376
T37079_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
RBM42
M142_0.6
Homo sapiens
AACUAMG
RNAcompete
Ray et al.(2013)
RNCMPT00151
0.859
ENSXETG00000017599
M237_0.6
Xenopus tropicalis
WACUAC
RNAcompete
Ray et al.(2013)
RNCMPT00282
0.817
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSFCAP00000005928
RRM
323
383
IFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRAMREMN
Links
Other
RRM
family RBPs
Other
Felis catus
RBPs
44 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
NOL8
Dasypus novemcinctus
ENSDNOG00000019774
N
0.000
NOL8
Felis catus
ENSFCAG00000000818
N
0.000
NOL8
Homo sapiens
ENSG00000198000
N
0.000
NOL8
Loxodonta africana
ENSLAFG00000002184
N
0.000
NOL8
Macaca mulatta
ENSMMUG00000004629
N
0.000
XR_023129.1
Pan troglodytes
ENSPTRG00000021109
N
0.000
NOL8
Spermophilus tridecemlineatus
ENSSTOG00000015195
N
0.000
NOL8
Tupaia belangeri
ENSTBEG00000014187
N
0.000