RBM42 (Felis catus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSFCAG00000006376 T37079_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
RBM42
M142_0.6 		Homo sapiens AACUAMG RNAcompete
Ray et al.(2013)
RNCMPT00151 		0.859
ENSXETG00000017599
M237_0.6 		Xenopus tropicalis WACUAC RNAcompete
Ray et al.(2013)
RNCMPT00282 		0.817
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSFCAP00000005928 RRM 323 383

Links

Other RRM family RBPs
Other Felis catus RBPs

44 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
RBM42 Homo sapiens ENSG00000126254 D 0.859
ENSXETG00000017599 Xenopus tropicalis ENSXETG00000017599 D 0.817
AAI29577 Xenopus laevis AAI29577 I 0.761
RBM42 Sorex araneus ENSSARG00000010724 I 0.859
Rbm42 Rattus norvegicus ENSRNOG00000024278 I 0.859
RBM42 Pteropus vampyrus ENSPVAG00000012815 I 0.859
RBM42 Pan troglodytes ENSPTRG00000010852 I 0.859
ENSPPYG00000009871 Pongo pygmaeus ENSPPYG00000009871 I 0.859
RBM42 Procavia capensis ENSPCAG00000013053 I 0.859
RBM42 Oryzias latipes ENSORLG00000003387 I 0.817
RBM42 Sus scrofa ENSSSCG00000002905 I 0.859
RBM42 Spermophilus tridecemlineatus ENSSTOG00000013050 I 0.859
RBM42 Tetraodon nigroviridis ENSTNIG00000011669 I 0.817
RBM42 Takifugu rubripes ENSTRUG00000004663 I 0.817
RBM42 Tarsius syrichta ENSTSYG00000014688 I 0.859
estExt_fgenesh2_pg.C_360096 Branchiostoma floridae estExt_fgenesh2_pg.C_360096 I 0.746
estExt_fgenesh2_pg.C_7640002 Branchiostoma floridae estExt_fgenesh2_pg.C_7640002 I 0.746
AAI29698 Xenopus laevis AAI29698 I 0.803
Ame_R009099 Ailuropoda melanoleuca Ame_R009099 I 0.859
A2VDB3 Xenopus laevis A2VDB3 I 0.803
RBM42 Ochotona princeps ENSOPRG00000001229 I 0.859
RBM42 Otolemur garnettii ENSOGAG00000004144 I 0.859
RBM42 Oryctolagus cuniculus ENSOCUG00000003337 I 0.859
RBM42 Erinaceus europaeus ENSEEUG00000004841 I 0.859
LOC100051102 Equus caballus ENSECAG00000018215 I 0.859
rbm42 Danio rerio ENSDARG00000039910 I 0.817
RBM42 Cavia porcellus ENSCPOG00000012365 I 0.859
RBM42 Callithrix jacchus ENSCJAG00000010220 I 0.859
RBM42 Canis familiaris ENSCAFG00000006925 I 0.859
RBM42_BOVIN Bos taurus ENSBTAG00000013440 I 0.859
RBM42 Anolis carolinensis ENSACAG00000005495 I 0.831
RBM42 Echinops telfairi ENSETEG00000007878 I 0.718
RBM42 Gasterosteus aculeatus ENSGACG00000004170 I 0.817
RBM42 Gorilla gorilla ENSGGOG00000009972 I 0.859
Rbm42 Mus musculus ENSMUSG00000036733 I 0.859
RBM42 Monodelphis domestica ENSMODG00000013957 I 0.859
RBM42 Macaca mulatta ENSMMUG00000018954 I 0.859
RBM42 Myotis lucifugus ENSMLUG00000011334 I 0.859
RBM42 Microcebus murinus ENSMICG00000009880 I 0.859
ENSMEUG00000016300 Macropus eugenii ENSMEUG00000016300 I 0.859
ENSMEUG00000003054 Macropus eugenii ENSMEUG00000003054 I 0.761
Smp_188120 Schistosoma mansoni Smp_188120 N 0.770
RBM42 Loxodonta africana ENSLAFG00000014993 N 0.746
Sjc_0014630 Schistosoma japonicum Sjc_0014630 N 0.746