CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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ENSXETG00000017599
(
Xenopus tropicalis
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSXETG00000017599
T42910_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
ENSXETG00000017599
M237_0.6
Xenopus tropicalis
WACUAC
RNAcompete
Ray et al.(2013)
RNCMPT00282
(Direct)
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
RBM42
M142_0.6
Homo sapiens
AACUAMG
RNAcompete
Ray et al.(2013)
RNCMPT00151
0.958
CG2931
M138_0.6
Drosophila melanogaster
DACUAAG
RNAcompete
Ray et al.(2013)
RNCMPT00147
0.704
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
Experimental Constructs
Motif ID
Domain
From
To
Sequence
M237_0.6
RRM
51
121
IFCGDLGNEVNDDILARAFSRYPSFLRAKVIRDKRTGKTKGYGFVSFKDPNDYVRAMREMNGKYVGSRPIK
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSXETP00000038206
RRM
295
365
IFCGDLGNEVNDDILARAFSRYPSFLRAKVIRDKRTGKTKGYGFVSFKDPNDYVRAMREMNGKYVGSRPIK
Links
Other
RRM
family RBPs
Other
Xenopus tropicalis
RBPs
110 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
RBM42
Anolis carolinensis
ENSACAG00000005495
I
0.986
A2VDB3
Xenopus laevis
A2VDB3
I
0.986
AAI29698
Xenopus laevis
AAI29698
I
0.986
RBM42
Gasterosteus aculeatus
ENSGACG00000004170
I
0.972
RBM42
Tetraodon nigroviridis
ENSTNIG00000011669
I
0.972
RBM42
Oryzias latipes
ENSORLG00000003387
I
0.972
RBM42
Takifugu rubripes
ENSTRUG00000004663
I
0.972
ENSMEUG00000016300
Macropus eugenii
ENSMEUG00000016300
I
0.958
Ame_R009099
Ailuropoda melanoleuca
Ame_R009099
I
0.958
RBM42
Oryctolagus cuniculus
ENSOCUG00000003337
I
0.958
RBM42
Microcebus murinus
ENSMICG00000009880
I
0.958
RBM42
Myotis lucifugus
ENSMLUG00000011334
I
0.958
Rbm42
Mus musculus
ENSMUSG00000036733
I
0.958
RBM42
Gorilla gorilla
ENSGGOG00000009972
I
0.958
RBM42
Macaca mulatta
ENSMMUG00000018954
I
0.958
RBM42
Homo sapiens
ENSG00000126254
D
0.958
RBM42
Callithrix jacchus
ENSCJAG00000010220
I
0.958
RBM42
Canis familiaris
ENSCAFG00000006925
I
0.958
RBM42_BOVIN
Bos taurus
ENSBTAG00000013440
I
0.958
RBM42
Cavia porcellus
ENSCPOG00000012365
I
0.958
rbm42
Danio rerio
ENSDARG00000039910
I
0.958
RBM42
Erinaceus europaeus
ENSEEUG00000004841
I
0.958
LOC100051102
Equus caballus
ENSECAG00000018215
I
0.958
RBM42
Otolemur garnettii
ENSOGAG00000004144
I
0.958
RBM42
Monodelphis domestica
ENSMODG00000013957
I
0.958
Rbm42
Rattus norvegicus
ENSRNOG00000024278
I
0.958
RBM42
Pan troglodytes
ENSPTRG00000010852
I
0.958
ENSPPYG00000009871
Pongo pygmaeus
ENSPPYG00000009871
I
0.958
RBM42
Sorex araneus
ENSSARG00000010724
I
0.958
RBM42
Sus scrofa
ENSSSCG00000002905
I
0.958
RBM42
Tarsius syrichta
ENSTSYG00000014688
I
0.958
RBM42
Spermophilus tridecemlineatus
ENSSTOG00000013050
I
0.958
RBM42
Procavia capensis
ENSPCAG00000013053
I
0.958
RBM42
Pteropus vampyrus
ENSPVAG00000012815
I
0.958
RBM42
Ochotona princeps
ENSOPRG00000001229
I
0.958
AAI29577
Xenopus laevis
AAI29577
I
0.944
estExt_fgenesh2_pg.C_360096
Branchiostoma floridae
estExt_fgenesh2_pg.C_360096
I
0.887
estExt_fgenesh2_pg.C_7640002
Branchiostoma floridae
estExt_fgenesh2_pg.C_7640002
I
0.887
RBM42
Loxodonta africana
ENSLAFG00000014993
N
0.859
ENSMEUG00000003054
Macropus eugenii
ENSMEUG00000003054
I
0.859
RBM42
Felis catus
ENSFCAG00000006376
I
0.817
XP_002167334.1
Hydra magnipapillata
XP_002167334.1
I
0.803
ENSCING00000006773
Ciona intestinalis
ENSCING00000006773
I
0.775
RBM42
Echinops telfairi
ENSETEG00000007878
I
0.775
estExt_Genewise1Plus.C_1180017
Capitella teleta
estExt_Genewise1Plus.C_1180017
I
0.775
AGAP010200
Anopheles gambiae
AGAP010200
I
0.775
e_gw1.16.225.1
Lottia gigantea
e_gw1.16.225.1
I
0.761
BRADI3G12840
Brachypodium distachyon
BRADI3G12840
I
0.761
AAEL010642
Aedes aegypti
AAEL010642
I
0.761
e_gw1.30.201.1
Daphnia pulex
e_gw1.30.201.1
I
0.761
SPPG_03010
Spizellomyces punctatus
SPPG_03010
I
0.761
PK16312.1
Cannabis sativa
PK16312.1
I
0.761
BGIOSIBCE028936
Oryza indica
BGIOSIBCE028936
I
0.746
AT3G04500
Arabidopsis thaliana
AT3G04500-TAIR-G
I
0.746
XM_002884402.1
Arabidopsis lyrata
fgenesh2_kg.3__407__AT3G04500.1
I
0.746
Cucsa.178480
Cucumis sativus
Cucsa.178480
I
0.746
GSVIVG00023509001
Vitis vinifera
GSVIVG00023509001
I
0.746
mgf021739m
Mimulus guttatus
mgf021739m
I
0.746
cassava22669.valid.m1
Manihot esculenta
cassava22669.valid.m1
I
0.746
GRMZM2G068255
Zea mays
GRMZM2G068255
I
0.746
B9IPA5_POPTR
Populus trichocarpa
POPTR_0019s03570
I
0.746
GRMZM2G125529
Zea mays
GRMZM2G125529
I
0.746
Glyma20g36570.1
Glycine max
Glyma20g36570.1
I
0.746
PHUM106890
Pediculus humanus
PHUM106890
I
0.746
Sb02g038420
Sorghum bicolor
Sb02g038420
I
0.746
LOC_Os08g45240
Oryza sativa
LOC_Os08g45240
I
0.746
Glyma10g30900.1
Glycine max
Glyma10g30900.1
I
0.746
29680.m001693
Ricinus communis
29680.m001693
I
0.746
CRE29329
Caenorhabditis remanei
CRE29329
I
0.732
CBN12017
Caenorhabditis brenneri
CBN12017
I
0.732
LOAG_04208
Loa loa
LOAG_04208
I
0.732
tag-262
Caenorhabditis elegans
Y54H5A.3
I
0.732
ppa010477m
Prunus persica
ppa010477m
I
0.732
SB04G026430
Sorghum bicolor
Sb04g026430
I
0.732
MDP0000320908
Malus x domestica
MDP0000320908
I
0.732
MDP0000283678
Malus x domestica
MDP0000283678
I
0.732
mgf018525m
Mimulus guttatus
mgf018525m
I
0.732
Aqu1.218430
Amphimedon queenslandica
Aqu1.218430
I
0.732
LjSGA_021949.1
Lotus japonicus
LjSGA_021949.1
I
0.732
Glyma11g01300.1
Glycine max
Glyma11g01300.1
I
0.732
B9I5N8_POPTR
Populus trichocarpa
POPTR_0013s04390
I
0.732
BRADI3G49130
Brachypodium distachyon
BRADI3G49130
I
0.732
CBG21313
Caenorhabditis briggsae
CBG21313
I
0.732
Bm1_40380
Brugia malayi
Bm1_40380
I
0.732
amel4_ncbi_hmm2520
Apis mellifera
amel4_ncbi_hmm2520
I
0.732
WUBG_05387
Wuchereria bancrofti
WUBG_05387
I
0.732
e_gw.92.129.1
Nematostella vectensis
e_gw.92.129.1
I
0.718
GSVIVG00016104001
Vitis vinifera
GSVIVG00016104001
I
0.718
GL22151
Drosophila persimilis
FBgn0159743
I
0.718
GK12952
Drosophila willistoni
FBgn0214961
I
0.718
GJ22705
Drosophila virilis
FBgn0209809
I
0.718
76581
Helobdella robusta
76581
I
0.718
Medtr1g093610
Medicago truncatula
Medtr1g093610
I
0.718
BGIOSIBCE007866
Oryza indica
BGIOSIBCE007866
I
0.718
PDK_20s1323974g003
Phoenix dactylifera
PDK_20s1323974g003
I
0.718
PDK_20s1301681g005
Phoenix dactylifera
PDK_20s1301681g005
I
0.718
BGIBMGA005213
Bombyx mori
BGIBMGA005213
I
0.718
GH22277
Drosophila grimshawi
FBgn0129737
I
0.718
CJA09414
Caenorhabditis japonica
CJA09414
I
0.718
GA15528-RA
Drosophila pseudoobscura
FBgn0075545
I
0.718
SNAPOd2T00026674001
Oikopleura dioica
SNAPOd2T00026674001
N
0.712
mgf008981m
Mimulus guttatus
mgf008981m
I
0.708
PTSG_04228
Salpingoeca rosetta
PTSG_04228
I
0.704
GE24162
Drosophila yakuba
FBgn0241294
I
0.704
GM10617
Drosophila sechellia
FBgn0165563
I
0.704
Ppa-tag-262
Pristionchus pacificus
PPA14507
I
0.704
GF11626
Drosophila ananassae
FBgn0088666
I
0.704
GP3.076550
Batrachochytrium dendrobatidis
GP3.076550
I
0.704
CG2931
Drosophila melanogaster
FBgn0037342
D
0.704
LOC_Os02g40900
Oryza sativa
LOC_Os02g40900
I
0.704