CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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ENSPCAG00000003709
(
Procavia capensis
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSPCAG00000003709
T40311_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSPCAP00000003432
RRM
89
112
LYVGNIPFGITEEAMMDFFNIQMR
ENSPCAP00000003432
RRM
120
163
PGNPVFAVEINQQKNFAFLEFRSVDETTQAMALDSIIFHGQSLK
ENSPCAP00000003432
RRM
199
269
LYIEGLPSCLNDDQVKELLTSFGPLKAFYLVKDSATGLSKGYAFCEYVDGRVTDQATAGLNGMQLGDKKLR
ENSPCAP00000003432
RRM
333
394
VEDVREECAKYGLVKSLEMPRPVDGVEVPGCGKIFVEFTTVLDCQKAMQGLTGRKFANRVVV
Links
Other
RRM
family RBPs
Other
Procavia capensis
RBPs
6 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
ENSLAFG00000028496
Loxodonta africana
ENSLAFG00000028496
N
0.886
e_gw1.2.1173.1
Trichoplax adhaerens
e_gw1.2.1173.1
N
0.706
e_gw.526.41.1
Branchiostoma floridae
e_gw.526.41.1
N
0.767
estExt_fgenesh2_pm.C_220017
Branchiostoma floridae
estExt_fgenesh2_pm.C_220017
N
0.764
XP_001189425.1
Strongylocentrotus purpuratus
XP_001189425.1
N
0.719
XP_792919.2
Strongylocentrotus purpuratus
XP_792919.2
N
0.719