CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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ENSPPYG00000019224
(
Pongo pygmaeus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSPPYG00000019224
T40598_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
RBMX
M344_0.6
Homo sapiens
CCM
SELEX
Cook et al.(2011)
922_19282290
0.744
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSPPYP00000021532
RRM
9
76
LFIGGLNMETNEKALEAVFGKGRIVEVLLMKDHETNKSRGFAFVTFESPADAKDAARKSLDGKAIKVE
Links
Other
RRM
family RBPs
Other
Pongo pygmaeus
RBPs
1 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
RBMX
Canis familiaris
ENSCAFG00000024996
I
0.792