CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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How to cite
RBMX
(
Canis familiaris
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSCAFG00000024996
T35222_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
RBMX
M344_0.6
Homo sapiens
CCM
SELEX
Cook et al.(2011)
922_19282290
0.831
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSCAFP00000034455
RRM
10
78
LFISGLNTETNEKALEAVFGKYLIVEVLMKDRETNKSKGFAFVIFESPADAKDTARDTNGKSLDGKAIK
Links
Other
RRM
family RBPs
Other
Canis familiaris
RBPs
3 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
ENSPPYG00000019224
Pongo pygmaeus
ENSPPYG00000019224
I
0.792
LOC100406653
Callithrix jacchus
ENSCJAG00000003626
I
0.732
RBMX
Homo sapiens
ENSG00000147274
D
0.718