CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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ENSRNOG00000001595
(
Rattus norvegicus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSRNOG00000001595
T41009_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
G3BP2
M021_0.6
Homo sapiens
AGGAUDR
RNAcompete
Ray et al.(2013)
RNCMPT00021
0.836
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSRNOP00000043133
RRM
292
357
LFVGNLPHDIDENELKEFFMHFGNVVELHINTKGVGGKLPNFGFVVFDDSEPLQRILIENQLCFGE
Links
Other
RRM
family RBPs
Other
Rattus norvegicus
RBPs
48 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
G3BP2
Homo sapiens
ENSG00000138757
D
0.836
AAH76729
Xenopus laevis
AAH76729
I
0.773
G3BP2
Pan troglodytes
ENSPTRG00000016175
I
0.836
ENSPPYG00000014846
Pongo pygmaeus
ENSPPYG00000014846
I
0.836
G3BP2
Procavia capensis
ENSPCAG00000015109
I
0.836
G3BP2
Oryzias latipes
ENSORLG00000007012
I
0.776
G3BP2
Ochotona princeps
ENSOPRG00000006307
I
0.836
G3BP2
Otolemur garnettii
ENSOGAG00000000157
I
0.836
G3BP2
Oryctolagus cuniculus
ENSOCUG00000003262
I
0.836
ENSOANG00000004714
Ornithorhynchus anatinus
ENSOANG00000004714
I
0.821
G3bp2
Mus musculus
ENSMUSG00000029405
I
0.836
G3BP2
Pteropus vampyrus
ENSPVAG00000010166
I
0.836
G3bp2
Rattus norvegicus
ENSRNOG00000002433
I
0.836
Ame_R007258
Ailuropoda melanoleuca
Ame_R007258
I
0.836
g3bp2
Xenopus tropicalis
ENSXETG00000000334
I
0.788
G3BP2
Vicugna pacos
ENSVPAG00000010710
I
0.836
G3BP2
Tursiops truncatus
ENSTTRG00000013795
I
0.821
G3BP2
Takifugu rubripes
ENSTRUG00000011405
I
0.776
G3BP2
Tetraodon nigroviridis
ENSTNIG00000011044
I
0.761
G3BP2
Taeniopygia guttata
ENSTGUG00000001561
I
0.806
ENSTBEG00000012323
Tupaia belangeri
ENSTBEG00000012323
I
0.836
ENSTBEG00000008258
Tupaia belangeri
ENSTBEG00000008258
I
0.836
G3BP2
Sorex araneus
ENSSARG00000009503
I
0.836
G3BP2
Monodelphis domestica
ENSMODG00000019205
I
0.821
G3BP2
Macaca mulatta
ENSMMUG00000002153
I
0.836
G3BP2
Myotis lucifugus
ENSMLUG00000004753
I
0.836
G3BP2
Dasypus novemcinctus
ENSDNOG00000012491
I
0.806
G3BP2
Danio rerio
ENSDARG00000074572
I
0.761
g3bp2
Danio rerio
ENSDARG00000014790
I
0.746
ENSDARG00000011704
Danio rerio
ENSDARG00000011704
I
0.761
G3BP2
Cavia porcellus
ENSCPOG00000012052
I
0.836
LOC100413275
Callithrix jacchus
ENSCJAG00000019897
I
0.836
G3BP2
Choloepus hoffmanni
ENSCHOG00000005346
I
0.806
G3BP2
Canis familiaris
ENSCAFG00000008371
I
0.836
Q2KJ17_BOVIN
Bos taurus
ENSBTAG00000014041
I
0.836
G3bp2
Dipodomys ordii
ENSDORG00000004825
I
0.836
G3BP2
Equus caballus
ENSECAG00000007917
I
0.836
G3BP2
Erinaceus europaeus
ENSEEUG00000013436
I
0.836
G3BP2
Microcebus murinus
ENSMICG00000007795
I
0.836
G3BP2
Meleagris gallopavo
ENSMGAG00000007221
I
0.806
G3BP2
Macropus eugenii
ENSMEUG00000004126
I
0.821
G3BP2
Loxodonta africana
ENSLAFG00000023321
I
0.836
G3BP2
Gorilla gorilla
ENSGGOG00000014947
I
0.836
G3BP2
Gallus gallus
ENSGALG00000010882
I
0.806
G3BP2
Gasterosteus aculeatus
ENSGACG00000017342
I
0.746
G3BP2
Felis catus
ENSFCAG00000010124
I
0.836
G3BP2
Echinops telfairi
ENSETEG00000016219
I
0.851
G3BP2
Anolis carolinensis
ENSACAG00000008695
I
0.806