CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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GG19774
(
Drosophila erecta
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
FBgn0111975
T43395_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
FBpp0138320
RRM
1
48
MRQAGEVTYADAHKQRRNEGVVEFASLSDMKTAIEKLDDTELNGRRIH
Links
Other
RRM
family RBPs
Other
Drosophila erecta
RBPs
7 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
BC1G_15665
Botrytis cinerea
BC1G_15665
N
0.000
e_gw1.1.4045.1
Trichoderma atroviride
e_gw1.1.4045.1
N
0.000
e_gw1.4.400.1
Trichoderma reesei
e_gw1.4.400.1
N
0.000
e_gw1.4.931.1
Thielavia terrestris
e_gw1.4.931.1
N
0.000
e_gw1.7.1285.1
Trichoderma virens
e_gw1.7.1285.1
N
0.000
estExt_fgenesh1_pg.C_160182
Cochliobolus heterostrophus C5
estExt_fgenesh1_pg.C_160182
N
0.000
estExt_fgenesh3_kg.C_70160
Neurospora discreta
estExt_fgenesh3_kg.C_70160
N
0.000
estExt_Genewise1Plus.C_20994
Myceliophthora thermophila
estExt_Genewise1Plus.C_20994
N
0.000
estExt_Genewise1Plus.C_50197
Neurospora tetrasperma
estExt_Genewise1Plus.C_50197
N
0.000
fgenesh1_pg.C_scaffold_8000060
Mycosphaerella fijiensis
fgenesh1_pg.C_scaffold_8000060
N
0.000
fgenesh1_pg.sca_1_chr1_3_0000632
Nectria haematococca
fgenesh1_pg.sca_1_chr1_3_0000632
N
0.000
EAT89416.2
Phaeosphaeria nodorum
EAT89416.2
N
0.000
AB08285.1
Alternaria brassicicola
AB08285.1
N
0.000
e_gw1.6.1433.1
Cryphonectria parasitica
e_gw1.6.1433.1
N
0.000
fgenesh1_pm.00772_#_139
Aspergillus carbonarius
fgenesh1_pm.00772_#_139
N
0.000
GSTUMT00004863001
Tuber melanosporum
GSTUMT00004863001
N
0.000
Pa_1_6970
Podospora anserina
Pa_1_6970
N
0.000
NCU03311
Neurospora crassa
NCU03311
N
0.000
ANIA_06074
Aspergillus nidulans
CADANIAG00006943
N
0.000
BDBG_05461
Blastomyces dermatitidis
BDBG_05461
N
0.000
CIMG_01023
Coccidioides immitis
CIMG_01023
N
0.000
CPSG_02191
Coccidioides posadasii
CPSG_02191
N
0.000
FGSG_00370
Fusarium graminearum
FGSG_00370
N
0.000
FOXG_00686
Fusarium oxysporum
FOXG_00686
N
0.000
FVEG_00825
Fusarium verticillioides
FVEG_00825
N
0.000
GLRG_10397
Colletotrichum graminicola
GLRG_10397
N
0.000
HCAG_03684
Histoplasma capsulatum
HCAG_03684
N
0.000
MGG_09885
Magnaporthe oryzae
MGG_09885
N
0.000
PABG_01625
Paracoccidioides brasiliensis
PABG_01625
N
0.000
SNOG_02685
Stagonospora nodorum
SNOG_02685
N
0.000
SS1G_09907
Sclerotinia sclerotiorum
SS1G_09907
N
0.000
UREG_00968
Uncinocarpus reesii
UREG_00968
N
0.000
VDAG_04254
Verticillium dahliae
VDAG_04254
N
0.000
ACLA_080910
Aspergillus clavatus
CADACLAG00007889
N
0.000
An12g04760
Aspergillus niger
CADANGAG00009919
N
0.000
PMAA_029040
Penicillium marneffei
PMAA_029040
N
0.000