CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
Home
Tools
Download cart
Bulk downloads
Database stats
Contact us
Help
How to cite
GL11105
(
Drosophila persimilis
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
FBgn0148715
T43682_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
FBpp0175212
RRM
46
115
LIVRNISYKSTDASLREYFSKWGTLEDVNILKRGDGKLVGCAFVQYETINQATKAILKTNGKDLQGRKIF
FBpp0175212
RRM
230
300
VFIKNVPFDADDADLRKVCRKFGLVNYAIINREAVSGHSRGTAFVKFKAKESADLCLQAGTEFTLMDEVLD
FBpp0175212
RRM
379
455
LSIHNLPYNYDDEKLKQMAQTYTGFRPHECRVMREHKITPEHPHGKSKGFGFISFETHQRALAALRKLNNNPNIFGA
Links
Other
RRM
family RBPs
Other
Drosophila persimilis
RBPs
11 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
GA18446-RA
Drosophila pseudoobscura
FBgn0078448
N
1.000
GE11426
Drosophila yakuba
FBgn0229232
N
0.881
GK21872
Drosophila willistoni
FBgn0223857
N
0.831
GJ21111
Drosophila virilis
FBgn0208244
N
0.854
GD24928
Drosophila simulans
FBgn0196242
N
0.881
GM11803
Drosophila sechellia
FBgn0166745
N
0.881
GI19540
Drosophila mojavensis
FBgn0142277
N
0.882
GH21568
Drosophila grimshawi
FBgn0129029
N
0.854
GG19902
Drosophila erecta
FBgn0112102
N
0.877
GF11912
Drosophila ananassae
FBgn0088951
N
0.891
CG4806
Drosophila melanogaster
FBgn0260456
N
0.881