CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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How to cite
CG4806
(
Drosophila melanogaster
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
FBgn0260456
T44423_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
FBpp0072239
RRM
50
119
LIVRNISYKSTEDSLREHFGQWGTLEDVHILKRGDGKLVGCAFVQYETINQATKAILNSNGKELLGRKVF
FBpp0072239
RRM
232
302
VFIKNVPFDAEDADLRKACRKFGLVSYAIINRQAVSGHSKGTAFVKFKAKESADLCLQAGTEFKLMDEVLD
FBpp0072239
RRM
380
457
LSIHNLPQNYDNEKLKQMALTYTGFRPHECRVMREHKVTPEHPQGKSKGFGFLSFDTHQRALAALRKLNNNPNIFGTQ
Links
Other
RRM
family RBPs
Other
Drosophila melanogaster
RBPs
11 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
GA18446-RA
Drosophila pseudoobscura
FBgn0078448
N
0.881
GK21872
Drosophila willistoni
FBgn0223857
N
0.890
GJ21111
Drosophila virilis
FBgn0208244
N
0.922
GD24928
Drosophila simulans
FBgn0196242
N
1.000
GM11803
Drosophila sechellia
FBgn0166745
N
1.000
GL11105
Drosophila persimilis
FBgn0148715
N
0.881
GI19540
Drosophila mojavensis
FBgn0142277
N
0.927
GH21568
Drosophila grimshawi
FBgn0129029
N
0.900
GG19902
Drosophila erecta
FBgn0112102
N
0.995
GF11912
Drosophila ananassae
FBgn0088951
N
0.923
GE11426
Drosophila yakuba
FBgn0229232
N
0.991