CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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Aqu1.211845
(
Amphimedon queenslandica
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
Aqu1.211845
T48957_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
Aqu1.211845
RRM
104
158
LFVGRINFDTSEGKLRREFESYGPVKRINIVSDPKSGKPRGYAFVEYENERDMHC
Links
Other
RRM
family RBPs
Other
Amphimedon queenslandica
RBPs
3 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
LOC100054907
Equus caballus
ENSECAG00000013936
I
0.709
Snrnp70
Rattus norvegicus
ENSRNOG00000020763
I
0.714
fgenesh2_pm.scaffold_94000015
Branchiostoma floridae
fgenesh2_pm.scaffold_94000015
N
0.709