CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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EFA80431.1
(
Polysphondylium pallidum
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
EFA80431.1
T54367_0.6
NCBI (2013-Jan-11)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
EFA80431.1
RRM
252
322
LFVCKLNPDTSSEDLELCFSSFGNIRSCEVIRDPVTNDSLCYAFVEYETKKQCETAYSKMENALIDERRIH
Links
Other
RRM
family RBPs
Other
Polysphondylium pallidum
RBPs
12 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
PK05006.1
Cannabis sativa
PK05006.1
N
0.000
cassava25245.valid.m1
Manihot esculenta
cassava25245.valid.m1
N
0.000
cassava28770.m1
Manihot esculenta
cassava28770.m1
N
0.000
Cucsa.322000
Cucumis sativus
Cucsa.322000
N
0.000
Glyma01g01950.1
Glycine max
Glyma01g01950.1
N
0.000
Glyma09g33960.1
Glycine max
Glyma09g33960.1
N
0.000
mgf007506m
Mimulus guttatus
mgf007506m
N
0.000
mgf014593m
Mimulus guttatus
mgf014593m
N
0.000
GRMZM2G051890
Zea mays
GRMZM2G051890
N
0.000
GRMZM2G102808
Zea mays
GRMZM2G102808
N
0.000
GRMZM2G114789
Zea mays
GRMZM2G114789
N
0.000
Medtr8g077770
Medicago truncatula
Medtr8g077770
N
0.000
MDP0000177505
Malus x domestica
MDP0000177505
N
0.000
MDP0000596287
Malus x domestica
MDP0000596287
N
0.000
PDK_20s1346002g005
Phoenix dactylifera
PDK_20s1346002g005
N
0.000
PDK_20s1373891g001
Phoenix dactylifera
PDK_20s1373891g001
N
0.000
PDK_20s1613681g001
Phoenix dactylifera
PDK_20s1613681g001
N
0.000
cassava25244.valid.m1
Manihot esculenta
cassava25244.valid.m1
N
0.000
30073.m002271
Ricinus communis
30073.m002271
N
0.000
29682.m000595
Ricinus communis
29682.m000595
N
0.000
XM_002865109.1
Arabidopsis lyrata
Al_scaffold_0008_128
N
0.000
AT4G17720
Arabidopsis thaliana
AT4G17720-TAIR-G
N
0.000
AT5G46870
Arabidopsis thaliana
AT5G46870-TAIR-G
N
0.000
BGIOSIBCE012743
Oryza indica
BGIOSIBCE012743
N
0.000
BGIOSIBCE020376
Oryza indica
BGIOSIBCE020376
N
0.000
BRADI1G10760
Brachypodium distachyon
BRADI1G10760
N
0.000
BRADI1G51740
Brachypodium distachyon
BRADI1G51740
N
0.000
XM_002867996.1
Arabidopsis lyrata
fgenesh2_kg.7__2538__AT4G17720.1
N
0.000
GSVIVG00011624001
Vitis vinifera
GSVIVG00011624001
N
0.000
GSVIVG00013098001
Vitis vinifera
GSVIVG00013098001
N
0.000
GSVIVG00024381001
Vitis vinifera
GSVIVG00024381001
N
0.000
LOC_Os03g50560
Oryza sativa
LOC_Os03g50560
N
0.000
LOC_Os06g02240
Oryza sativa
LOC_Os06g02240
N
0.000
A9PE83_POPTR
Populus trichocarpa
POPTR_0001s02090
N
0.000
B9GZI4_POPTR
Populus trichocarpa
POPTR_0003s09410
N
0.000
SB10G000940
Sorghum bicolor
Sb10g000940
N
0.000
ppa024222m
Prunus persica
ppa024222m
N
0.000