CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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EFA80431.1
(
Polysphondylium pallidum
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
EFA80431.1
T54367_0.6
NCBI (2013-Jan-11)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
EFA80431.1
RRM
252
322
LFVCKLNPDTSSEDLELCFSSFGNIRSCEVIRDPVTNDSLCYAFVEYETKKQCETAYSKMENALIDERRIH
Links
Other
RRM
family RBPs
Other
Polysphondylium pallidum
RBPs
12 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
DDB_G0292710
Dictyostelium discoideum
DDB_G0292710
N
0.746
gw1.1.256.1
Neurospora tetrasperma
gw1.1.256.1
N
0.718
fgeneshTA2_pg.C_scaffold_8000290
Trichoplax adhaerens
fgeneshTA2_pg.C_scaffold_8000290
N
0.718
fgeneshDP_pm.C_scaffold_5000011
Dictyostelium purpureum
fgeneshDP_pm.C_scaffold_5000011
N
0.746
estExt_GeneWisePlus.C_270056
Trichoderma reesei
estExt_GeneWisePlus.C_270056
N
0.704
estExt_Genewise1Plus.C_12820
Neurospora discreta
estExt_Genewise1Plus.C_12820
N
0.718
estExt_Genewise1.C_30053
Myceliophthora thermophila
estExt_Genewise1.C_30053
N
0.704
estExt_Genewise1.C_23809
Thielavia terrestris
estExt_Genewise1.C_23809
N
0.704
e_gw1.11.236.1
Trichoderma atroviride
e_gw1.11.236.1
N
0.704
Aqu1.223583
Amphimedon queenslandica
Aqu1.223583
N
0.704
NCU10166
Neurospora crassa
NCU10166
N
0.718
Pa_2_13850
Podospora anserina
Pa_2_13850
N
0.704