CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
Home
Tools
Download cart
Bulk downloads
Database stats
Contact us
Help
How to cite
fgeneshDP_pm.C_scaffold_5000011
(
Dictyostelium purpureum
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
fgeneshDP_pm.C_scaffold_5000011
T52388_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
fgeneshDP_pm.C_scaffold_5000011
RRM
244
314
LFVCKLNPTTESEDLEIVFSQCGTIKSCEVVRDKVTGDSLCYAFVEYSSKEECERAYLKMENILIDERRIH
Links
Other
RRM
family RBPs
Other
Dictyostelium purpureum
RBPs
5 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
DDB_G0292710
Dictyostelium discoideum
DDB_G0292710
N
0.887
EFA80431.1
Polysphondylium pallidum
EFA80431.1
N
0.746
SPPG_03169
Spizellomyces punctatus
SPPG_03169
N
0.718
PPIL4
Takifugu rubripes
ENSTRUG00000006670
N
0.704
fgeneshTA2_pg.C_scaffold_8000290
Trichoplax adhaerens
fgeneshTA2_pg.C_scaffold_8000290
N
0.704