Medtr1g108050 (Medicago truncatula)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 Medtr1g108050 T54438_0.6 PlantGDB (2010-Oct-15)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
Medtr1g108050.1 RRM 36 103
Medtr1g108050.1 RRM 140 205

Links

Other RRM family RBPs
Other Medicago truncatula RBPs

48 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ppa009968m Prunus persica ppa009968m N 0.719
Glyma19g39850.1 Glycine max Glyma19g39850.1 N 0.815
Glyma03g37240.1 Glycine max Glyma03g37240.1 N 0.815
Cucsa.205570 Cucumis sativus Cucsa.205570 N 0.770
Cucsa.181840 Cucumis sativus Cucsa.181840 N 0.711
cassava4050.m1 Manihot esculenta cassava4050.m1 N 0.741
cassava4049.m1 Manihot esculenta cassava4049.m1 N 0.741
cassava4048.m1 Manihot esculenta cassava4048.m1 N 0.741
cassava4047.m1 Manihot esculenta cassava4047.m1 N 0.741
cassava4046.m1 Manihot esculenta cassava4046.m1 N 0.741
cassava24707.valid.m1 Manihot esculenta cassava24707.valid.m1 N 0.741
Glyma20g38060.1 Glycine max Glyma20g38060.1 N 0.711
mgf007149m Mimulus guttatus mgf007149m N 0.704
ppa009360m Prunus persica ppa009360m N 0.719
ppa009045m Prunus persica ppa009045m N 0.770
ppa009033m Prunus persica ppa009033m N 0.770
MDP0000271362 Malus x domestica MDP0000271362 N 0.748
chr5.CM0299.260.nc Lotus japonicus chr5.CM0299.260.nc N 0.704
Medtr8g068270 Medicago truncatula Medtr8g068270 N 0.815
Medtr1g099910 Medicago truncatula Medtr1g099910 N 0.704
GRMZM2G436092 Zea mays GRMZM2G436092 N 0.724
GRMZM2G331811 Zea mays GRMZM2G331811 N 0.704
mgf007835m Mimulus guttatus mgf007835m N 0.704
cassava24706.valid.m1 Manihot esculenta cassava24706.valid.m1 N 0.741
cassava22829.valid.m1 Manihot esculenta cassava22829.valid.m1 N 0.726
GSVIVG00031132001 Vitis vinifera GSVIVG00031132001 N 0.711
GSVIVG00027997001 Vitis vinifera GSVIVG00027997001 N 0.733
XM_002892438.1 Arabidopsis lyrata fgenesh2_kg.1__949__AT1G09140.1 N 0.704
XM_002874870.1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6002776 N 0.741
XM_002889376.1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1000165 N 0.741
BRADI2G11990 Brachypodium distachyon BRADI2G11990 N 0.711
BRADI1G62780 Brachypodium distachyon BRADI1G62780 N 0.726
BRADI1G18070 Brachypodium distachyon BRADI1G18070 N 0.733
BGIOSIBCE011068 Oryza indica BGIOSIBCE011068 N 0.719
At-SR30 Arabidopsis thaliana AT1G09140-TAIR-G N 0.701
LOC_Os03g22380 Oryza sativa LOC_Os03g22380 N 0.719
LOC_Os07g47630 Oryza sativa LOC_Os07g47630 N 0.704
cassava1174.valid.m1 Manihot esculenta cassava1174.valid.m1 N 0.741
cassava1173.valid.m1 Manihot esculenta cassava1173.valid.m1 N 0.741
30128.m008840 Ricinus communis 30128.m008840 N 0.733
29986.m001610 Ricinus communis 29986.m001610 N 0.733
SB03G013010 Sorghum bicolor Sb03g013010 N 0.704
SB01G035680 Sorghum bicolor Sb01g035680 N 0.739
B9I9S0_POPTR Populus trichocarpa POPTR_0014s12440 N 0.741
B9I7H7_POPTR Populus trichocarpa POPTR_0013s01700 N 0.733
B9N4J4_POPTR Populus trichocarpa POPTR_0005s02450 N 0.719
B9GSA0_POPTR Populus trichocarpa POPTR_0002s20650 N 0.719
SR34 Arabidopsis thaliana AT1G02840-TAIR-G N 0.739