MDP0000271362 (Malus x domestica)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 MDP0000271362 T57546_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
MDP0000271362 RRM 10 77
MDP0000271362 RRM 114 180

Links

Other RRM family RBPs
Other Malus x domestica RBPs

82 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ppa009033m Prunus persica ppa009033m N 0.956
ppa009045m Prunus persica ppa009045m N 0.956
cassava4046.m1 Manihot esculenta cassava4046.m1 N 0.911
cassava1174.valid.m1 Manihot esculenta cassava1174.valid.m1 N 0.911
cassava4047.m1 Manihot esculenta cassava4047.m1 N 0.911
cassava4049.m1 Manihot esculenta cassava4049.m1 N 0.911
cassava4050.m1 Manihot esculenta cassava4050.m1 N 0.911
B9I9S0_POPTR Populus trichocarpa POPTR_0014s12440 N 0.911
cassava4048.m1 Manihot esculenta cassava4048.m1 N 0.911
cassava1173.valid.m1 Manihot esculenta cassava1173.valid.m1 N 0.911
29986.m001610 Ricinus communis 29986.m001610 N 0.904
Cucsa.205570 Cucumis sativus Cucsa.205570 N 0.904
cassava24707.valid.m1 Manihot esculenta cassava24707.valid.m1 N 0.896
cassava24706.valid.m1 Manihot esculenta cassava24706.valid.m1 N 0.896
Glyma03g37240.1 Glycine max Glyma03g37240.1 N 0.881
B9GSA0_POPTR Populus trichocarpa POPTR_0002s20650 N 0.881
Glyma19g39850.1 Glycine max Glyma19g39850.1 N 0.874
GSVIVG00027997001 Vitis vinifera GSVIVG00027997001 N 0.867
Medtr8g068270 Medicago truncatula Medtr8g068270 N 0.859
B9I7H7_POPTR Populus trichocarpa POPTR_0013s01700 N 0.852
mgf007149m Mimulus guttatus mgf007149m N 0.844
mgf007835m Mimulus guttatus mgf007835m N 0.844
SB01G035680 Sorghum bicolor Sb01g035680 N 0.837
BRADI1G62780 Brachypodium distachyon BRADI1G62780 N 0.837
30128.m008840 Ricinus communis 30128.m008840 N 0.837
MDP0000231034 Malus x domestica MDP0000231034 N 0.830
BRADI1G18070 Brachypodium distachyon BRADI1G18070 N 0.830
XM_002874870.1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6002776 N 0.830
cassava22829.valid.m1 Manihot esculenta cassava22829.valid.m1 N 0.822
BGIOSIBCE011068 Oryza indica BGIOSIBCE011068 N 0.822
B9N4J4_POPTR Populus trichocarpa POPTR_0005s02450 N 0.822
GSVIVG00031132001 Vitis vinifera GSVIVG00031132001 N 0.822
XM_002889376.1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1000165 N 0.822
LOC_Os03g22380 Oryza sativa LOC_Os03g22380 N 0.822
GRMZM2G436092 Zea mays GRMZM2G436092 N 0.815
ppa009360m Prunus persica ppa009360m N 0.815
Cucsa.181840 Cucumis sativus Cucsa.181840 N 0.815
Glyma20g38060.1 Glycine max Glyma20g38060.1 N 0.815
ppa009968m Prunus persica ppa009968m N 0.815
SR34 Arabidopsis thaliana AT1G02840-TAIR-G N 0.815
LOC_Os05g30140 Oryza sativa LOC_Os05g30140 N 0.815
BGIOSIBCE018731 Oryza indica BGIOSIBCE018731 N 0.815
BRADI2G11990 Brachypodium distachyon BRADI2G11990 N 0.800
Medtr1g099910 Medicago truncatula Medtr1g099910 N 0.800
chr5.CM0299.260.nc Lotus japonicus chr5.CM0299.260.nc N 0.800
LOC_Os07g47630 Oryza sativa LOC_Os07g47630 N 0.800
e_gw1.7.233.1 Physcomitrella patens e_gw1.7.233.1 N 0.794
estExt_Genewise1.C_280136 Physcomitrella patens estExt_Genewise1.C_280136 N 0.794
GRMZM2G170365 Zea mays GRMZM2G170365 N 0.793
BGIOSIBCE001550 Oryza indica BGIOSIBCE001550 N 0.793
GRMZM2G331811 Zea mays GRMZM2G331811 N 0.793
SB03G013010 Sorghum bicolor Sb03g013010 N 0.793
XM_002892438.1 Arabidopsis lyrata fgenesh2_kg.1__949__AT1G09140.1 N 0.785
e_gw1.173.63.1 Physcomitrella patens e_gw1.173.63.1 N 0.785
Sb09g018110 Sorghum bicolor Sb09g018110 N 0.778
gw1.41.236.1 Selaginella moellendorfii gw1.41.236.1 N 0.778
At-SR30 Arabidopsis thaliana AT1G09140-TAIR-G N 0.770
SR34b Arabidopsis thaliana AT4G02430-TAIR-G N 0.763
29827.m002610 Ricinus communis 29827.m002610 N 0.748
cassava17474.valid.m1 Manihot esculenta cassava17474.valid.m1 N 0.748
cassava17475.valid.m1 Manihot esculenta cassava17475.valid.m1 N 0.748
30128.m008837 Ricinus communis 30128.m008837 N 0.748
Medtr1g108050 Medicago truncatula Medtr1g108050 N 0.748
Glyma06g14060.1 Glycine max Glyma06g14060.1 N 0.741
Glyma04g40740.1 Glycine max Glyma04g40740.1 N 0.741
e_gw1.19.485.1 Selaginella moellendorfii e_gw1.19.485.1 N 0.733
XM_002875918.1 Arabidopsis lyrata scaffold_501926.1 N 0.733
Medtr3g122850 Medicago truncatula Medtr3g122850 N 0.733
B9IDH4_POPTR Populus trichocarpa POPTR_0015s00690 N 0.733
B9I218_POPTR Populus trichocarpa POPTR_0012s02870 N 0.733
chr2.CM0249.1120.nc Lotus japonicus chr2.CM0249.1120.nc N 0.726
PK08657.1 Cannabis sativa PK08657.1 N 0.726
mgf014175m Mimulus guttatus mgf014175m N 0.726
MDP0000857322 Malus x domestica MDP0000857322 N 0.726
GSVIVG00038636001 Vitis vinifera GSVIVG00038636001 N 0.726
mgf000052m Mimulus guttatus mgf000052m N 0.726
mgf011321m Mimulus guttatus mgf011321m N 0.726
MDP0000268577 Malus x domestica MDP0000268577 N 0.719
MDP0000200391 Malus x domestica MDP0000200391 N 0.719
ppa017674m Prunus persica ppa017674m N 0.719
At-SR34a Arabidopsis thaliana AT3G49430-TAIR-G N 0.719
chr1.LjT29L06.170.nd Lotus japonicus chr1.LjT29L06.170.nd N 0.719