CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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Medtr8g029490
(
Medicago truncatula
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
Medtr8g029490
T54601_0.6
PlantGDB (2010-Oct-15)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
Medtr8g029490.1
RRM
4
65
VFAGNLEYDTRQSELERLFSKYGRIERVDMKSGFAFVYYEDERDAEEAIRALDNIPFGHDKR
Medtr8g029490.1
RRM
93
156
LFVINFDPIRTRVSDIERHFKPYGPLHHVRIRRNFAFVQYETQEDATKALECTNMSKILDRVVS
Medtr8g029490.2
RRM
1
33
MKSGFAFVYYEDERDAEEAIRALDNIPFGHDKR
Medtr8g029490.2
RRM
61
124
LFVINFDPIRTRVSDIERHFKPYGPLHHVRIRRNFAFVQYETQEDATKALECTNMSKILDRVVS
Links
Other
RRM
family RBPs
Other
Medicago truncatula
RBPs
35 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
estExt_fgenesh1_kg.C_20558
Myceliophthora thermophila
estExt_fgenesh1_kg.C_20558
N
0.000