Medtr8g029490 (Medicago truncatula)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 Medtr8g029490 T54601_0.6 PlantGDB (2010-Oct-15)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
Medtr8g029490.1 RRM 4 65
Medtr8g029490.1 RRM 93 156
Medtr8g029490.2 RRM 1 33
Medtr8g029490.2 RRM 61 124

Links

Other RRM family RBPs
Other Medicago truncatula RBPs

35 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Glyma07g05900.1 Glycine max Glyma07g05900.1 N 0.905
Glyma16g02500.1 Glycine max Glyma16g02500.1 N 0.905
Cucsa.259460 Cucumis sativus Cucsa.259460 N 0.841
cassava43624.valid.m1 Manihot esculenta cassava43624.valid.m1 N 0.817
cassava43625.valid.m1 Manihot esculenta cassava43625.valid.m1 N 0.817
PK15848.1 Cannabis sativa PK15848.1 N 0.810
29742.m001371 Ricinus communis 29742.m001371 N 0.810
mgf003788m Mimulus guttatus mgf003788m N 0.804
MDP0000263938 Malus x domestica MDP0000263938 N 0.802
MDP0000387508 Malus x domestica MDP0000387508 N 0.802
B9GR47_POPTR Populus trichocarpa POPTR_0002s17560 N 0.802
ppa008137m Prunus persica ppa008137m N 0.794
mgf011632m Mimulus guttatus mgf011632m N 0.794
GSVIVG00027193001 Vitis vinifera GSVIVG00027193001 N 0.786
B9I911_POPTR Populus trichocarpa POPTR_0014s09730 N 0.786
XM_002882032.1 Arabidopsis lyrata fgenesh2_kg.4__2884__AT2G46610.1 N 0.778
XM_002878371.1 Arabidopsis lyrata fgenesh2_kg.5__2682__AT3G61860.1 N 0.770
RS31 Arabidopsis thaliana AT3G61860-TAIR-G N 0.762
BGIOSIBCE013939 Oryza indica BGIOSIBCE013939 N 0.754
LOC_Os04g02870 Oryza sativa LOC_Os04g02870 N 0.754
BGIOSIBCE005422 Oryza indica BGIOSIBCE005422 N 0.740
cassava31732.valid.m1 Manihot esculenta cassava31732.valid.m1 N 0.740
cassava31733.valid.m1 Manihot esculenta cassava31733.valid.m1 N 0.740
LOC_Os02g03040 Oryza sativa LOC_Os02g03040 N 0.740
BRADI5G01430 Brachypodium distachyon BRADI5G01430 N 0.738
B9GPU7_POPTR Populus trichocarpa POPTR_0002s15490 N 0.724
B9ID09_POPTR Populus trichocarpa POPTR_0015s13880 N 0.717
RS31a Arabidopsis thaliana AT2G46610-TAIR-G N 0.714
PDK_20s1467051g001 Phoenix dactylifera PDK_20s1467051g001 N 0.709
B9I4G0_POPTR Populus trichocarpa POPTR_0012s13920 N 0.709
B9IC71_POPTR Populus trichocarpa POPTR_0014s07270 N 0.709
SB06G001100 Sorghum bicolor Sb06g001100 N 0.706
cassava31734.valid.m1 Manihot esculenta cassava31734.valid.m1 N 0.704
ppa005993m Prunus persica ppa005993m N 0.701