CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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MDP0000943534
(
Malus x domestica
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
MDP0000943534
T57746_0.6
Superfamily (2011-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
MDP0000943534
RRM
315
378
LEDEVASECAKYGTVTRVLIFEITEPNFPENEAVRIFIQFERPEETTKSLVDLDGRYFGGRVVR
Links
Other
RRM
family RBPs
Other
Malus x domestica
RBPs
5 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
BRADI1G74670
Brachypodium distachyon
BRADI1G74670
N
0.723
B9NB85_POPTR
Populus trichocarpa
POPTR_0011s10050
N
0.875
Glyma20g02910.1
Glycine max
Glyma20g02910.1
N
0.704
MDP0000162585
Malus x domestica
MDP0000162585
N
0.708
PDK_20s1617311g001
Phoenix dactylifera
PDK_20s1617311g001
N
0.821