CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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PDK_20s1617311g001
(
Phoenix dactylifera
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
PDK_20s1617311g001
T58202_0.6
Superfamily (2011-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
PDK_20s1617311g001
RRM
9
75
DDELEDEVASECAKYGTVTRVLIFEITEPNFPEDEAVRIFVQFERSEETTKALIDLESRFFGGRVVH
Links
Other
RRM
family RBPs
Other
Phoenix dactylifera
RBPs
4 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
B9NB85_POPTR
Populus trichocarpa
POPTR_0011s10050
N
0.836
MDP0000943534
Malus x domestica
MDP0000943534
N
0.821
BRADI1G74670
Brachypodium distachyon
BRADI1G74670
N
0.776
PDK_20s1603131g002
Phoenix dactylifera
PDK_20s1603131g002
N
0.720