CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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AAH76729
(
Xenopus laevis
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
AAH76729
T59543_0.6
Xenbase (2010-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
G3BP2
M021_0.6
Homo sapiens
AGGAUDR
RNAcompete
Ray et al.(2013)
RNCMPT00021
0.851
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
AAH76729
RRM
334
396
LFVGNLPHDIDESELKEFFMSYGNVMELRINTKGVGGKLPNFGFVVFDDSEPVQRILLSKPVM
Links
Other
RRM
family RBPs
Other
Xenopus laevis
RBPs
53 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
G3BP2
Homo sapiens
ENSG00000138757
D
0.851
AAH45051
Xenopus laevis
AAH45051
I
0.714
G3BP2
Pan troglodytes
ENSPTRG00000016175
I
0.851
ENSPPYG00000014846
Pongo pygmaeus
ENSPPYG00000014846
I
0.851
G3BP2
Procavia capensis
ENSPCAG00000015109
I
0.851
G3BP2
Oryzias latipes
ENSORLG00000007012
I
0.821
G3BP2
Ochotona princeps
ENSOPRG00000006307
I
0.851
G3BP2
Otolemur garnettii
ENSOGAG00000000157
I
0.851
G3BP2
Oryctolagus cuniculus
ENSOCUG00000003262
I
0.851
ENSOANG00000004714
Ornithorhynchus anatinus
ENSOANG00000004714
I
0.851
G3bp2
Mus musculus
ENSMUSG00000029405
I
0.851
G3BP2
Monodelphis domestica
ENSMODG00000019205
I
0.851
G3BP2
Pteropus vampyrus
ENSPVAG00000010166
I
0.851
ENSRNOG00000001595
Rattus norvegicus
ENSRNOG00000001595
I
0.773
G3bp2
Rattus norvegicus
ENSRNOG00000002433
I
0.851
Ame_R007258
Ailuropoda melanoleuca
Ame_R007258
I
0.851
g3bp2
Xenopus tropicalis
ENSXETG00000000334
I
0.954
G3BP2
Vicugna pacos
ENSVPAG00000010710
I
0.851
G3BP2
Tursiops truncatus
ENSTTRG00000013795
I
0.836
G3BP2
Takifugu rubripes
ENSTRUG00000011405
I
0.836
G3BP2
Tetraodon nigroviridis
ENSTNIG00000011044
I
0.821
G3BP2
Taeniopygia guttata
ENSTGUG00000001561
I
0.866
G3BP1
Taeniopygia guttata
ENSTGUG00000000753
I
0.701
ENSTBEG00000012323
Tupaia belangeri
ENSTBEG00000012323
I
0.851
ENSTBEG00000008258
Tupaia belangeri
ENSTBEG00000008258
I
0.851
G3BP2
Sorex araneus
ENSSARG00000009503
I
0.851
XM_001369493.1
Monodelphis domestica
ENSMODG00000008993
I
0.746
G3BP2
Macaca mulatta
ENSMMUG00000002153
I
0.851
G3bp2
Dipodomys ordii
ENSDORG00000004825
I
0.851
G3BP2
Dasypus novemcinctus
ENSDNOG00000012491
I
0.836
G3BP2
Danio rerio
ENSDARG00000074572
I
0.791
g3bp2
Danio rerio
ENSDARG00000014790
I
0.791
ENSDARG00000011704
Danio rerio
ENSDARG00000011704
I
0.791
G3BP2
Cavia porcellus
ENSCPOG00000012052
I
0.851
LOC100413275
Callithrix jacchus
ENSCJAG00000019897
I
0.851
G3BP2
Choloepus hoffmanni
ENSCHOG00000005346
I
0.821
G3BP2
Canis familiaris
ENSCAFG00000008371
I
0.851
Q2KJ17_BOVIN
Bos taurus
ENSBTAG00000014041
I
0.851
G3BP1
Anolis carolinensis
ENSACAG00000009792
I
0.766
G3BP2
Equus caballus
ENSECAG00000007917
I
0.851
G3BP2
Erinaceus europaeus
ENSEEUG00000013436
I
0.851
G3BP2
Myotis lucifugus
ENSMLUG00000004753
I
0.851
G3BP2
Microcebus murinus
ENSMICG00000007795
I
0.851
G3BP2
Meleagris gallopavo
ENSMGAG00000007221
I
0.866
G3BP1
Meleagris gallopavo
ENSMGAG00000005963
I
0.701
G3BP2
Macropus eugenii
ENSMEUG00000004126
I
0.851
G3BP2
Loxodonta africana
ENSLAFG00000023321
I
0.851
G3BP2
Gorilla gorilla
ENSGGOG00000014947
I
0.851
G3BP2
Gallus gallus
ENSGALG00000010882
I
0.866
G3BP2
Gasterosteus aculeatus
ENSGACG00000017342
I
0.821
G3BP2
Felis catus
ENSFCAG00000010124
I
0.851
G3BP2
Echinops telfairi
ENSETEG00000016219
I
0.821
G3BP2
Anolis carolinensis
ENSACAG00000008695
I
0.851