CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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cassava1917.valid.m1
(
Manihot esculenta
)
YTH
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF04146 (YTH)
IPR007275
cassava1917.valid.m1
T62318_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
cassava1917.valid.m1
YTH
458
548
LFFSVNASAQFCGVAEMVGPVDFDKSVDYWQQDKWSGQFPVKWHIAKDVPNSQFRHIVLENNDNKPVTNSRDTQEVKLEQGIEMLNIFKNY
Links
Other
YTH
family RBPs
Other
Manihot esculenta
RBPs
193 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
PTRG_03988
Pyrenophora tritici repentis
PTRG_03988
N
0.000
SNOG_01478
Stagonospora nodorum
SNOG_01478
N
0.000
estExt_fgenesh1_pg.C_160205
Mycosphaerella fijiensis
estExt_fgenesh1_pg.C_160205
N
0.000
EAT91127.2
Phaeosphaeria nodorum
EAT91127.2
N
0.000
AB06054.1
Alternaria brassicicola
AB06054.1
N
0.000