cassava1917.valid.m1 (Manihot esculenta)
YTH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF04146 (YTH) IPR007275 cassava1917.valid.m1 T62318_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
cassava1917.valid.m1 YTH 458 548

Links

Other YTH family RBPs
Other Manihot esculenta RBPs

193 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
cassava1916.valid.m1 Manihot esculenta cassava1916.valid.m1 N 1.000
cassava1918.valid.m1 Manihot esculenta cassava1918.valid.m1 N 1.000
B9N5D4_POPTR Populus trichocarpa POPTR_0014s00320 N 0.967
B9HG69_POPTR Populus trichocarpa POPTR_0007s15150 N 0.967
GSVIVG00029460001 Vitis vinifera GSVIVG00029460001 N 0.967
PK17832.1 Cannabis sativa PK17832.1 N 0.956
MDP0000287088 Malus x domestica MDP0000287088 N 0.945
ppa002588m Prunus persica ppa002588m N 0.945
ppa002483m Prunus persica ppa002483m N 0.945
MDP0000617859 Malus x domestica MDP0000617859 N 0.945
MDP0000405927 Malus x domestica MDP0000405927 N 0.945
Medtr4g163280 Medicago truncatula Medtr4g163280 N 0.945
ECT5 Arabidopsis thaliana AT3G13060-TAIR-G N 0.934
MDP0000248088 Malus x domestica MDP0000248088 N 0.934
XM_002882758.1 Arabidopsis lyrata fgenesh2_kg.3__1376__AT3G13060.2 N 0.934
Glyma07g00280.1 Glycine max Glyma07g00280.1 N 0.934
MDP0000552419 Malus x domestica MDP0000552419 N 0.934
cassava6538.valid.m1 Manihot esculenta cassava6538.valid.m1 N 0.923
29929.m004643 Ricinus communis 29929.m004643 N 0.923
chr3.CM0292.380.nc Lotus japonicus chr3.CM0292.380.nc N 0.923
B9GMK5_POPTR Populus trichocarpa POPTR_0001s13870 N 0.923
cassava12061.valid.m1 Manihot esculenta cassava12061.valid.m1 N 0.923
Glyma08g24210.1 Glycine max Glyma08g24210.1 N 0.912
GSVIVG00010494001 Vitis vinifera GSVIVG00010494001 N 0.901
SB07G024500 Sorghum bicolor Sb07g024500 N 0.879
PK01736.1 Cannabis sativa PK01736.1 N 0.879
GRMZM2G025488 Zea mays GRMZM2G025488 N 0.879
BGIOSIBCE028829 Oryza indica BGIOSIBCE028829 N 0.868
LOC_Os08g44200 Oryza sativa LOC_Os08g44200 N 0.868
LOC_Os08g12760 Oryza sativa LOC_Os08g12760 N 0.857
BGIOSIBCE026930 Oryza indica BGIOSIBCE026930 N 0.857
GRMZM2G442195 Zea mays GRMZM2G442195 N 0.846
BRADI3G42640 Brachypodium distachyon BRADI3G42640 N 0.846
SB07G006330 Sorghum bicolor Sb07g006330 N 0.846
LOC_Os04g51940 Oryza sativa LOC_Os04g51940 N 0.835
BRADI3G18190 Brachypodium distachyon BRADI3G18190 N 0.835
29890.m000285 Ricinus communis 29890.m000285 N 0.824
SB06G027960 Sorghum bicolor Sb06g027960 N 0.824
B9N817_POPTR Populus trichocarpa POPTR_0018s14670 N 0.824
ppa003664m Prunus persica ppa003664m N 0.824
mgf019821m Mimulus guttatus mgf019821m N 0.824
MDP0000171737 Malus x domestica MDP0000171737 N 0.824
PK23104.1 Cannabis sativa PK23104.1 N 0.824
gw1.181.55.1 Physcomitrella patens gw1.181.55.1 N 0.824
B9HI18_POPTR Populus trichocarpa POPTR_0008s08030 N 0.813
GSVIVG00036696001 Vitis vinifera GSVIVG00036696001 N 0.813
LOC_Os01g48790 Oryza sativa LOC_Os01g48790 N 0.813
PK05579.1 Cannabis sativa PK05579.1 N 0.813
Cucsa.356240 Cucumis sativus Cucsa.356240 N 0.813
BRADI2G46590 Brachypodium distachyon BRADI2G46590 N 0.813
PDK_20s1441394g001 Phoenix dactylifera PDK_20s1441394g001 N 0.813
BGIOSIBCE003171 Oryza indica BGIOSIBCE003171 N 0.813
GSVIVG00032236001 Vitis vinifera GSVIVG00032236001 N 0.813
Medtr2g085380 Medicago truncatula Medtr2g085380 N 0.802
Glyma08g17240.1 Glycine max Glyma08g17240.1 N 0.802
Glyma15g41960.1 Glycine max Glyma15g41960.1 N 0.802
GRMZM2G169116 Zea mays GRMZM2G169116 N 0.802
29955.m001158 Ricinus communis 29955.m001158 N 0.802
SB03G031190 Sorghum bicolor Sb03g031190 N 0.802
gw1.198.66.1 Physcomitrella patens gw1.198.66.1 N 0.802
B9HBC4_POPTR Populus trichocarpa POPTR_0006s07970 N 0.802
cassava42992.valid.m1 Manihot esculenta cassava42992.valid.m1 N 0.791
MDP0000286471 Malus x domestica MDP0000286471 N 0.791
XM_002864508.1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_8001450 N 0.791
ppa002677m Prunus persica ppa002677m N 0.791
ECT10 Arabidopsis thaliana AT5G58190-TAIR-G N 0.791
BGIOSIBCE016517 Oryza indica BGIOSIBCE016517 N 0.791
cassava42993.valid.m1 Manihot esculenta cassava42993.valid.m1 N 0.791
ppa018635m Prunus persica ppa018635m N 0.791
ECT8 Arabidopsis thaliana AT1G79270-TAIR-G N 0.791
XM_002893450.1 Arabidopsis lyrata fgenesh2_kg.1__2951__AT1G27960.1 N 0.791
LjSGA_032005.1 Lotus japonicus LjSGA_032005.1 N 0.791
XM_002887730.1 Arabidopsis lyrata fgenesh2_kg.2__2224__AT1G79270.1 N 0.791
MDP0000231231 Malus x domestica MDP0000231231 N 0.791
Medtr8g134440 Medicago truncatula Medtr8g134440 N 0.791
GRMZM2G127780 Zea mays GRMZM2G127780 N 0.791
GRMZM2G126338 Zea mays GRMZM2G126338 N 0.791
B9HYD4_POPTR Populus trichocarpa POPTR_0010s18300 N 0.791
GSVIVG00017649001 Vitis vinifera GSVIVG00017649001 N 0.791
SB01G008170 Sorghum bicolor Sb01g008170 N 0.791
cassava17772.valid.m1 Manihot esculenta cassava17772.valid.m1 N 0.780
ECT9 Arabidopsis thaliana AT1G27960-TAIR-G N 0.780
cassava17771.valid.m1 Manihot esculenta cassava17771.valid.m1 N 0.780
MDP0000306387 Malus x domestica MDP0000306387 N 0.780
chr6.LjT36O06.80.nd Lotus japonicus chr6.LjT36O06.80.nd N 0.780
LOC_Os03g53670 Oryza sativa LOC_Os03g53670 N 0.780
Glyma17g04270.1 Glycine max Glyma17g04270.1 N 0.780
PDK_20s1308332g001 Phoenix dactylifera PDK_20s1308332g001 N 0.780
MDP0000132385 Malus x domestica MDP0000132385 N 0.780
B9HII9_POPTR Populus trichocarpa POPTR_0008s09960 N 0.769
29889.m003364 Ricinus communis 29889.m003364 N 0.769
PDK_20s1631851g001 Phoenix dactylifera PDK_20s1631851g001 N 0.769
gw1.1.157.1 Selaginella moellendorfii gw1.1.157.1 N 0.769
MDP0000189157 Malus x domestica MDP0000189157 N 0.769
BRADI4G02150 Brachypodium distachyon BRADI4G02150 N 0.769
PDK_20s1352821g002 Phoenix dactylifera PDK_20s1352821g002 N 0.769
Glyma09g03590.1 Glycine max Glyma09g03590.1 N 0.769
XM_002894050.1 Arabidopsis lyrata fgenesh2_kg.1__3903__AT1G48110.2 N 0.758
Cucsa.135220 Cucumis sativus Cucsa.135220 N 0.758
LOC_Os03g20180 Oryza sativa LOC_Os03g20180 N 0.758
BRADI1G64100 Brachypodium distachyon BRADI1G64100 N 0.758
BGIOSIBCE010884 Oryza indica BGIOSIBCE010884 N 0.758
Glyma15g14490.1 Glycine max Glyma15g14490.1 N 0.758
Medtr2g036990 Medicago truncatula Medtr2g036990 N 0.758
mgf017987m Mimulus guttatus mgf017987m N 0.758
Glyma07g36110.1 Glycine max Glyma07g36110.1 N 0.758
ECT7 Arabidopsis thaliana AT1G48110-TAIR-G N 0.758
cassava35663.valid.m1 Manihot esculenta cassava35663.valid.m1 N 0.747
cassava12388.valid.m1 Manihot esculenta cassava12388.valid.m1 N 0.747
cassava35662.valid.m1 Manihot esculenta cassava35662.valid.m1 N 0.747
B9GXX7_POPTR Populus trichocarpa POPTR_0003s20840 N 0.747
cassava35661.valid.m1 Manihot esculenta cassava35661.valid.m1 N 0.747
cassava35665.valid.m1 Manihot esculenta cassava35665.valid.m1 N 0.747
mgf013853m Mimulus guttatus mgf013853m N 0.747
MDP0000124048 Malus x domestica MDP0000124048 N 0.747
GSVIVG00025494001 Vitis vinifera GSVIVG00025494001 N 0.747
cassava35666.valid.m1 Manihot esculenta cassava35666.valid.m1 N 0.747
mgf009938m Mimulus guttatus mgf009938m N 0.747
cassava35660.valid.m1 Manihot esculenta cassava35660.valid.m1 N 0.747
B9HX84_POPTR Populus trichocarpa POPTR_0010s16210 N 0.747
cassava30728.valid.m1 Manihot esculenta cassava30728.valid.m1 N 0.747
cassava30729.valid.m1 Manihot esculenta cassava30729.valid.m1 N 0.747
cassava12387.valid.m1 Manihot esculenta cassava12387.valid.m1 N 0.747
cassava30727.valid.m1 Manihot esculenta cassava30727.valid.m1 N 0.747
mgf015583m Mimulus guttatus mgf015583m N 0.747
cassava35657.valid.m1 Manihot esculenta cassava35657.valid.m1 N 0.747
mgf014143m Mimulus guttatus mgf014143m N 0.747
mgf013935m Mimulus guttatus mgf013935m N 0.747
cassava35667.valid.m1 Manihot esculenta cassava35667.valid.m1 N 0.747
cassava35659.valid.m1 Manihot esculenta cassava35659.valid.m1 N 0.747
cassava35658.valid.m1 Manihot esculenta cassava35658.valid.m1 N 0.747
cassava12386.valid.m1 Manihot esculenta cassava12386.valid.m1 N 0.747
GSVIVG00033395001 Vitis vinifera GSVIVG00033395001 N 0.747
ECT3 Arabidopsis thaliana AT5G61020-TAIR-G N 0.747
PK26094.1 Cannabis sativa PK26094.1 N 0.747
cassava12389.valid.m1 Manihot esculenta cassava12389.valid.m1 N 0.747
cassava38866.m1 Manihot esculenta cassava38866.m1 N 0.747
cassava38867.m1 Manihot esculenta cassava38867.m1 N 0.747
XM_002885156.1 Arabidopsis lyrata Al_scaffold_0003_1823 N 0.747
GRMZM2G144726 Zea mays GRMZM2G144726 N 0.736
BRADI1G05970 Brachypodium distachyon BRADI1G05970 N 0.736
SB02G003990 Sorghum bicolor Sb02g003990 N 0.736
PK02315.1 Cannabis sativa PK02315.1 N 0.736
MDP0000488588 Malus x domestica MDP0000488588 N 0.736
cassava18203.valid.m1 Manihot esculenta cassava18203.valid.m1 N 0.736
ECT6 Arabidopsis thaliana AT3G17330-TAIR-G N 0.736
XM_002884922.1 Arabidopsis lyrata fgenesh2_kg.3__1434__AT3G13460.1 N 0.736
ECT2 Arabidopsis thaliana AT3G13460-TAIR-G N 0.736
cassava18205.valid.m1 Manihot esculenta cassava18205.valid.m1 N 0.736
cassava20494.m1 Manihot esculenta cassava20494.m1 N 0.736
cassava20495.m1 Manihot esculenta cassava20495.m1 N 0.736
cassava18204.valid.m1 Manihot esculenta cassava18204.valid.m1 N 0.736
XM_002866364.1 Arabidopsis lyrata fgenesh2_kg.8__2071__AT5G61020.1 N 0.736
Cucsa.142200 Cucumis sativus Cucsa.142200 N 0.725
Glyma05g30020.1 Glycine max Glyma05g30020.1 N 0.725
ECT1 Arabidopsis thaliana AT3G03950-TAIR-G N 0.725
ECT4 Arabidopsis thaliana AT1G55500-TAIR-G N 0.725
29950.m001140 Ricinus communis 29950.m001140 N 0.725
XM_002891791.1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_1004195 N 0.725
MDP0000256033 Malus x domestica MDP0000256033 N 0.725
29765.m000746 Ricinus communis 29765.m000746 N 0.725
Sb01g046550 Sorghum bicolor Sb01g046550 N 0.714
mgf019846m Mimulus guttatus mgf019846m N 0.714
cassava22612.valid.m1 Manihot esculenta cassava22612.valid.m1 N 0.714
PK23716.1 Cannabis sativa PK23716.1 N 0.714
GRMZM2G076062 Zea mays GRMZM2G076062 N 0.714
cassava13323.valid.m1 Manihot esculenta cassava13323.valid.m1 N 0.714
cassava14932.m1 Manihot esculenta cassava14932.m1 N 0.714
MDP0000718677 Malus x domestica MDP0000718677 N 0.714
cassava13324.valid.m1 Manihot esculenta cassava13324.valid.m1 N 0.714
Medtr4g136900 Medicago truncatula Medtr4g136900 N 0.714
GSVIVG00023248001 Vitis vinifera GSVIVG00023248001 N 0.714
MDP0000129009 Malus x domestica MDP0000129009 N 0.714
BRADI1G74560 Brachypodium distachyon BRADI1G74560 N 0.714
B9N0D5_POPTR Populus trichocarpa POPTR_0004s23250 N 0.714
A9PED2_POPTR Populus trichocarpa POPTR_0019s04990 N 0.714
cassava13322.valid.m1 Manihot esculenta cassava13322.valid.m1 N 0.714
Glyma08g13130.1 Glycine max Glyma08g13130.1 N 0.714
XM_002882275.1 Arabidopsis lyrata fgenesh2_kg.3__349__AT3G03950.3 N 0.714
GRMZM2G330019 Zea mays GRMZM2G330019 N 0.714
ppa003557m Prunus persica ppa003557m N 0.714
SB01G005500 Sorghum bicolor Sb01g005500 N 0.714
BGIOSIBCE028833 Oryza indica BGIOSIBCE028833 N 0.703
BGIOSIBCE009738 Oryza indica BGIOSIBCE009738 N 0.703
MDP0000488248 Malus x domestica MDP0000488248 N 0.703
MDP0000199885 Malus x domestica MDP0000199885 N 0.703
mgf001716m Mimulus guttatus mgf001716m N 0.703
BGIOSIBCE023845 Oryza indica BGIOSIBCE023845 N 0.703
mgf014829m Mimulus guttatus mgf014829m N 0.703
LOC_Os07g07490 Oryza sativa LOC_Os07g07490 N 0.703
LOC_Os03g06240 Oryza sativa LOC_Os03g06240 N 0.703
BRADI3G06027 Brachypodium distachyon BRADI3G06027 N 0.703
B9N770_POPTR Populus trichocarpa POPTR_0022s00680 N 0.703