CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
Home
Tools
Download cart
Bulk downloads
Database stats
Contact us
Help
How to cite
PTSG_08923
(
Salpingoeca rosetta
)
CCCH ZF,RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
PF00076 (RRM_1)
IPR000571
IPR000504
PTSG_08923
T00314_0.6
Broad (2011-Oct-27)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
PTSG_08923T0
CCCH ZF
13
39
KDKVNCSFYYKIGACRHGDRCSRLHNK
PTSG_08923T0
RRM
84
142
ADLFWELEEKYGPIVDMNVCDNLGDHLVGNVYIMFKNEEDAEKAVEDLNNRWYNGNPIV
PTSG_08923T0
CCCH ZF
150
176
DFKEACCRQYELGECTRGGFCNFMHLK
Links
Other
CCCH ZF,RRM
family RBPs
Other
Salpingoeca rosetta
RBPs
89 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
AGAP006733
Anopheles gambiae
AGAP006733
N
0.000
Sjc_0037310
Schistosoma japonicum
Sjc_0037310
N
0.000
Smp_005260
Schistosoma mansoni
Smp_005260
N
0.000