PTSG_08923 (Salpingoeca rosetta)
CCCH ZF,RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH)
PF00076 (RRM_1) 		IPR000571
IPR000504 		PTSG_08923 T00314_0.6 Broad (2011-Oct-27)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
PTSG_08923T0 CCCH ZF 13 39
PTSG_08923T0 RRM 84 142
PTSG_08923T0 CCCH ZF 150 176

Links

Other CCCH ZF,RRM family RBPs
Other Salpingoeca rosetta RBPs

89 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
e_gw.121.26.1 Nematostella vectensis e_gw.121.26.1 N 0.850
ENSCING00000004086 Ciona intestinalis ENSCING00000004086 N 0.833
ENSCSAVG00000000329 Ciona savignyi ENSCSAVG00000000329 N 0.833
e_gw.8.588.1 Branchiostoma floridae e_gw.8.588.1 N 0.833
Aqu1.219575 Amphimedon queenslandica Aqu1.219575 N 0.833
e_gw.8.587.1 Branchiostoma floridae e_gw.8.587.1 N 0.833
AAI08559 Xenopus laevis AAI08559 N 0.832
U2AF1 Loxodonta africana ENSLAFG00000011460 N 0.823
U2AF1 Tarsius syrichta ENSTSYG00000006799 N 0.823
U2AF1 Tetraodon nigroviridis ENSTNIG00000008311 N 0.823
U2AF1 Microcebus murinus ENSMICG00000013835 N 0.823
U2AF1 Taeniopygia guttata ENSTGUG00000005826 N 0.823
ENSGACG00000003454 Gasterosteus aculeatus ENSGACG00000003454 N 0.823
U2AF1 Macaca mulatta ENSMMUG00000022769 N 0.823
U2af1 Mus musculus ENSMUSG00000061613 N 0.823
U2AF1 Oryzias latipes ENSORLG00000006182 N 0.823
U2AF1 Homo sapiens ENSG00000160201 N 0.823
U2AF1 Monodelphis domestica ENSMODG00000021029 N 0.823
U2AF1 Pan troglodytes ENSPTRG00000013952 N 0.823
U2AF1 Procavia capensis ENSPCAG00000013413 N 0.823
Q98TR0_CHICK Gallus gallus ENSGALG00000016198 N 0.823
U2AF1 Anolis carolinensis ENSACAG00000017836 N 0.823
U2AF1 Cavia porcellus ENSCPOG00000004893 N 0.823
U2AF1 Echinops telfairi ENSETEG00000002200 N 0.823
U2AF1_BOVIN Bos taurus ENSBTAG00000011645 N 0.823
U2AF1 Takifugu rubripes ENSTRUG00000013815 N 0.814
u2af1 Danio rerio ENSDARG00000015325 N 0.814
e_gw1.30.183.1 Daphnia pulex e_gw1.30.183.1 N 0.814
U2AF1 Gasterosteus aculeatus ENSGACG00000014605 N 0.814
estExt_Genewise1.C_3650003 Capitella teleta estExt_Genewise1.C_3650003 N 0.807
184981 Helobdella robusta 184981 N 0.807
PHUM349680 Pediculus humanus PHUM349680 N 0.805
BGIBMGA010333 Bombyx mori BGIBMGA010333 N 0.805
nasonia_NCBI_hmm622923 Nasonia vitripennis nasonia_NCBI_hmm622923 N 0.805
LOC100415206 Callithrix jacchus ENSCJAG00000015843 N 0.805
GA17536-RA Drosophila pseudoobscura FBgn0077547 N 0.796
U2AF1 Vicugna pacos ENSVPAG00000002856 N 0.796
Ame_R019749 Ailuropoda melanoleuca Ame_R019749 N 0.796
GF24893 Drosophila ananassae FBgn0101885 N 0.796
U2af38 Drosophila melanogaster FBgn0017457 N 0.796
GG24659 Drosophila erecta FBgn0116791 N 0.796
GM16679 Drosophila sechellia FBgn0171592 N 0.796
GK14823 Drosophila willistoni FBgn0216828 N 0.796
GD22967 Drosophila simulans FBgn0194360 N 0.796
GL25824 Drosophila persimilis FBgn0163408 N 0.796
GE16227 Drosophila yakuba FBgn0233767 N 0.796
GH10217 Drosophila grimshawi FBgn0117698 N 0.796
GI15018 Drosophila mojavensis FBgn0137768 N 0.796
GJ17240 Drosophila virilis FBgn0204416 N 0.796
U2AF1 Pteropus vampyrus ENSPVAG00000016992 N 0.796
U2AF1 Myotis lucifugus ENSMLUG00000014756 N 0.796
ENSORLG00000008857 Oryzias latipes ENSORLG00000008857 N 0.796
LOC100057570 Equus caballus ENSECAG00000015558 N 0.796
U2AF1 Ornithorhynchus anatinus ENSOANG00000006463 N 0.796
U2AF1 Meleagris gallopavo ENSMGAG00000014587 N 0.796
U2AF1 Canis familiaris ENSCAFG00000010572 N 0.796
U2AF1 Tupaia belangeri ENSTBEG00000000453 N 0.796
U2af1 Dipodomys ordii ENSDORG00000000211 N 0.796
U2AF1 Spermophilus tridecemlineatus ENSSTOG00000012766 N 0.796
amel4_ncbi_hmm38272 Apis mellifera amel4_ncbi_hmm38272 N 0.796
CPIJ016711 Culex quinquefasciatus CPIJ016711 N 0.788
CPIJ003901 Culex quinquefasciatus CPIJ003901 N 0.788
XP_002156010.1 Hydra magnipapillata XP_002156010.1 N 0.788
CpipJ_CPIJ016711 Culex pipiens CpipJ_CPIJ016711 N 0.788
AAEL006713 Aedes aegypti AAEL006713 N 0.788
CpipJ_CPIJ003901 Culex pipiens CpipJ_CPIJ003901 N 0.788
AGAP002956 Anopheles gambiae AGAP002956 N 0.788
e_gw1.35.104.1 Trichoplax adhaerens e_gw1.35.104.1 N 0.780
e_gw1.49.82.1 Lottia gigantea e_gw1.49.82.1 N 0.776
U2AF4_BOVIN Bos taurus ENSBTAG00000023610 N 0.772
U2AF1L4 Equus caballus ENSECAG00000017941 N 0.772
U2AF1L4 Monodelphis domestica ENSMODG00000014003 N 0.772
U2AF1L4 Oryctolagus cuniculus ENSOCUG00000013434 N 0.772
U2af1l4 Rattus norvegicus ENSRNOG00000024497 N 0.772
U2AF1L4 Sus scrofa ENSSSCG00000002896 N 0.772
U2af1l4 Mus musculus ENSMUSG00000078765 N 0.772
U2AF1L4 Loxodonta africana ENSLAFG00000012923 N 0.772
XP_001191705.1 Strongylocentrotus purpuratus XP_001191705.1 N 0.769
U2AF1L4 Gorilla gorilla ENSGGOG00000016828 N 0.754
ENSGGOG00000025487 Gorilla gorilla ENSGGOG00000025487 N 0.752
XP_002167624.1 Hydra magnipapillata XP_002167624.1 N 0.752
Smp_093100 Schistosoma mansoni Smp_093100 N 0.752
U2AF1L4 Homo sapiens ENSG00000161265 N 0.746
SPPG_02695 Spizellomyces punctatus SPPG_02695 N 0.731
U2AF1L4 Pan troglodytes ENSPTRG00000010860 N 0.723
Sjc_0045900 Schistosoma japonicum Sjc_0045900 N 0.722
e_gw1.5.355.1 Batrachochytrium dendrobatidis e_gw1.5.355.1 N 0.714
ENSTNIG00000013914 Tetraodon nigroviridis ENSTNIG00000013914 N 0.705
Q9YHU4_FUGRU Takifugu rubripes ENSTRUG00000010538 N 0.705