CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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mgf000973m
(
Mimulus guttatus
)
CCCH ZF,RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
PF00076 (RRM_1)
IPR000571
IPR000504
mgf000973m
T00985_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
mgf000973m
CCCH ZF
212
234
WRPCMYFAKGFCKNGGNCKFLHH
mgf000973m
RRM
324
384
DSTFKEEDVSNYFGMFGPVQDVRIPYQQKRMFGFVTFVYAETVKAILAKGNPHFVCDSRVL
Links
Other
CCCH ZF,RRM
family RBPs
Other
Mimulus guttatus
RBPs
73 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
Cstf2
Mus musculus
ENSMUSG00000031256
N
0.000
CSTF2
Otolemur garnettii
ENSOGAG00000011192
N
0.000
CSTF2
Ochotona princeps
ENSOPRG00000003106
N
0.000
CSTF2
Spermophilus tridecemlineatus
ENSSTOG00000001797
N
0.000
ENSMGAG00000004139
Meleagris gallopavo
ENSMGAG00000004139
N
0.000
LOC100062520
Equus caballus
ENSECAG00000004701
N
0.000