CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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MDP0000259773
(
Malus x domestica
)
CCCH ZF,RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
PF00076 (RRM_1)
IPR000571
IPR000504
MDP0000259773
T01104_0.6
Superfamily (2011-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
MDP0000259773
CCCH ZF
11
32
KPCLYFAXSYCKNGASCRFLHS
MDP0000259773
RRM
155
214
NSTFREEDVSNYFSMYGPVQDVRIPYQQKRMFGFVTFLYPETVKLILAKGNPHFVCDARV
Links
Other
CCCH ZF,RRM
family RBPs
Other
Malus x domestica
RBPs
65 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
cip1
Schizosaccharomyces pombe
SPBC16A3.18
N
0.000
SOCG_00560
Schizosaccharomyces octosporus
SOCG_00560
N
0.000