CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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SOCG_00560
(
Schizosaccharomyces octosporus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
SOCG_00560
T30656_0.6
Broad (2011-Oct-27)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
SOCG_00560T0
RRM
213
283
IVVKNIPFSLEKDTLLEAFKQLGIPRPYAFNYHYDNGIFRGLAFANFYLPEEAQAVVQALNGYEINSRRLR
Links
Other
RRM
family RBPs
Other
Schizosaccharomyces octosporus
RBPs
2 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
SJAG_04385
Schizosaccharomyces japonicus
SJAG_04385
N
0.859
SPOG_01945
Schizosaccharomyces cryophilus
SPOG_01945
N
0.704