CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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ppa023263m
(
Prunus persica
)
CCCH ZF,RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
PF00076 (RRM_1)
IPR000571
IPR000504
ppa023263m
T01133_0.6
Superfamily (2011-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ppa023263m
CCCH ZF
252
273
KPCLYFARGYCKNGTSCRFLHG
ppa023263m
RRM
402
461
DSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKLILAKGNPHFVCDARV
Links
Other
CCCH ZF,RRM
family RBPs
Other
Prunus persica
RBPs
77 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
Cstf2
Mus musculus
ENSMUSG00000031256
N
0.000
CSTF2
Otolemur garnettii
ENSOGAG00000011192
N
0.000
CSTF2
Ochotona princeps
ENSOPRG00000003106
N
0.000
CSTF2
Spermophilus tridecemlineatus
ENSSTOG00000001797
N
0.000
ENSMGAG00000004139
Meleagris gallopavo
ENSMGAG00000004139
N
0.000
LOC100062520
Equus caballus
ENSECAG00000004701
N
0.000