CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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B9HNW7_POPTR
(
Populus trichocarpa
)
CCCH ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
IPR000571
POPTR_0009s05810
T04048_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
POPTR_0009s05810.1
CCCH ZF
290
311
PCPDHKKGTCRRGDLCEYAHGI
Links
Other
CCCH ZF
family RBPs
Other
Populus trichocarpa
RBPs
13 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
EDO06615.1
Babesia bovis
EDO06615.1
N
0.000